Locus 8840

Sequence ID 3R_DroMel_CAF1
Location 23,677,568 – 23,677,665
Length 97
Max. P 0.795792
window14193

overview

Window 3

Location 23,677,568 – 23,677,665
Length 97
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 81.99
Mean single sequence MFE -24.70
Consensus MFE -16.10
Energy contribution -16.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.35
Structure conservation index 0.65
SVM decision value 0.60
SVM RNA-class probability 0.795792
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23677568 97 - 27905053
UGUGAAAUUUAAGACGUUCCAUGU------CUG---CUGUGUUGCAUUCAAUUUGGCG-GCGUAUUAAGUUUUCAAGCUGCAGCUUGAAACUUGAUAAAUAAAUUAC
.....((((((((((((...))))------))(---((((((((....))))...)))-)).((((((((((.(((((....)))))))))))))))..)))))).. ( -26.60)
>DroVir_CAF1 190049 88 - 1
U----AUCUUAAGGCCUGUC---U------------CGGCAUUGCAUUCAAUUUGGUCUUGGUAUUAAGUUUUCAAGCUGCAGCUUGAAACUUGAUAAAUAAAUUAC
.----...((((((((.((.---.------------..))((((....))))..))))))))((((((((((.(((((....))))))))))))))).......... ( -23.20)
>DroEre_CAF1 146091 103 - 1
UGUGAAAUUUAAGACGCUCCAUGUUUACUACUG---CAGUGUUGCAUUCAAUUUGGCG-GCGUAUUAAGUUUUCAAGCUGCAGCUUGAAACUUGAUAAAUAAAUUAC
.....((((((..((((((((.(((......((---(......)))...))).))).)-))))(((((((((.(((((....))))))))))))))...)))))).. ( -26.60)
>DroYak_CAF1 145641 97 - 1
UGUGAAAUUUAAGACGCUCCUUGU------CUG---CAGCGUUGCAUUCAAUUUGGCG-GCGUAUUAAGUUUUCAAGCUGCAGCUUGAAACUUGAUAAAUAAAUUAC
.....((((((..((((((((((.------.((---(......)))..)))...)).)-))))(((((((((.(((((....))))))))))))))...)))))).. ( -27.70)
>DroMoj_CAF1 206901 88 - 1
U----AUCUUAAGACCUGCC---U------------CGGCAUUGCAUUCAAUUUGGUUCUGGUAUUAAGUUUUCAAGCUGCAGCUUGAAACUUGAUAAAUAAAUUAC
.----...(((..(((.((.---.------------..))((((....))))..)))..)))((((((((((.(((((....))))))))))))))).......... ( -20.70)
>DroAna_CAF1 145346 100 - 1
UCUGGAAUUUAAGACCCUCUGUUU------AUGUGUCUGUGUUGCAUUCAAUUUGGCG-GCGUAUUAAGUUUUCAAGCUGCAGCUUGAAACUUGAUAAAUAAAUUAC
.....((((((((((.(.......------..).))))..(((((..........)))-)).((((((((((.(((((....)))))))))))))))..)))))).. ( -23.40)
>consensus
UGUGAAAUUUAAGACCCUCC_UGU______CUG___CAGCGUUGCAUUCAAUUUGGCG_GCGUAUUAAGUUUUCAAGCUGCAGCUUGAAACUUGAUAAAUAAAUUAC
.................................................((((((.......((((((((((.(((((....)))))))))))))))..)))))).. (-16.10 = -16.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:59 2006