Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,987,334 – 2,987,431 |
Length | 97 |
Max. P | 0.822400 |
Location | 2,987,334 – 2,987,431 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 78.83 |
Mean single sequence MFE | -33.48 |
Consensus MFE | -22.08 |
Energy contribution | -21.72 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.09 |
Mean z-score | -1.67 |
Structure conservation index | 0.66 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.822400 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2987334 97 + 27905053 CU--GCCAUUGAUGUGUGAUGACGGUUUCUGGGCGCGUCUCGCAUC----------CCAAGUGGAGAAUUGAUAUUUGCAUCGAUGGCAUUUGAUGGCGGUGGAUCAGU .(--(((((((((((((((.(((((((....))).)))))))).((----------((....)).))..........)))))))))))).(((((........))))). ( -33.20) >DroPse_CAF1 28926 104 + 1 AUUGGCCAUUGAUGUGUGCUGACGGUUUCUGGGCGCGUCG--CAUCGUCUCUUCGAUGAGGCAUUGGAUUGAUAUUUGCAUUGAUGGCAUUUGAUGGCUGGCGGUU--- .(..(((((..(...((((((((((((....))).))))(--((..(((..(((((((...)))))))..)))...)))......))))))..)))))..).....--- ( -33.80) >DroEre_CAF1 33342 96 + 1 UU--GCCAUUGAUGUGUGAUGACGGUUUCUGGGCGCGUCUCCAAUC----------CCAAGUGGUGGAUUGGUAUUUGCAUCGAUGGCAUUUGAUGGCGGUGGAUCAG- .(--(((((((((((.....(((((((....))).)))).((((((----------((.....).))))))).....))))))))))))..((((........)))).- ( -34.90) >DroYak_CAF1 41445 96 + 1 CU--GCCAUUGAUGUGUGGUGACGGUUUCUGGGCGCGUCUCCAAUC----------CCAACUGAUGGAUUGGUAUUUGCAUCGAUGGCAUUUGAUGGCGGUGGAUCAA- .(--(((((((((((.....(((((((....))).)))).((((((----------(........))))))).....)))))))))))).(((((........)))))- ( -34.80) >DroAna_CAF1 26313 95 + 1 -A--GCCAUUGAUGUGUGCUGACGGUUUCUGGGCGCGUCUCCCGGC----------CAAGCCAUUGGAUUGAUAUUUGCAUCGAUGGCAUUUGAUGGCGGUUGAUCAG- -.--((((((((((((((((.(.......).)))))((((((.(((----------...)))...)))..)))....)))))))))))...((((........)))).- ( -30.40) >DroPer_CAF1 28040 104 + 1 AUUGGCCAUUGAUGUGUGCUGACGGUUUCUGGGCGCGUCG--CAUCGUCUCUUCGAUGAGGCAUUGGAUUGAUAUUUGCAUUGAUGGCAUUUGAUGGCUGGCGGUU--- .(..(((((..(...((((((((((((....))).))))(--((..(((..(((((((...)))))))..)))...)))......))))))..)))))..).....--- ( -33.80) >consensus AU__GCCAUUGAUGUGUGCUGACGGUUUCUGGGCGCGUCUCCCAUC__________CCAAGCAUUGGAUUGAUAUUUGCAUCGAUGGCAUUUGAUGGCGGUGGAUCAG_ ....(((((((((((.....(((((((....))).))))..........................((((....)))))))))))))))..................... (-22.08 = -21.72 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:32 2006