Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 23,666,276 – 23,666,372 |
Length | 96 |
Max. P | 0.782285 |
Location | 23,666,276 – 23,666,372 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 74.72 |
Mean single sequence MFE | -30.87 |
Consensus MFE | -15.95 |
Energy contribution | -16.84 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.24 |
Mean z-score | -1.82 |
Structure conservation index | 0.52 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.782285 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23666276 96 + 27905053 -----UGCACCCGCUUGAUGCAUU-----GCACUUUGGCGUGUUGCUGACGCCGCGGGCGA-GCUGCGAAUGCCGCAGUGCAUUUGGCAAAUAAGAAAAAUUGCAUA -----((((....((((.(((..(-----(((((.((((((.((((.(.((((...)))).-.).)))))))))).))))))....)))..))))......)))).. ( -34.00) >DroVir_CAF1 176201 104 + 1 CAUAUGCCACCCGUUUGAUGCAUUGCUUUGUACUUUGCCGCAUCGCUGCUGACGUUGACUGCGACGCGA---CUGAAGUGCAUUUGGCAAAUAAGAAAAAUUGCAUA ..(((((.....((.....)).(((((.(((((((((.(((.((((..(.......)...)))).))).---).))))))))...)))))............))))) ( -27.80) >DroGri_CAF1 165954 98 + 1 AAUGUGCCACCCGUUUGAUGCAUUGCUUUGCACUUUGCCGCAUCGCUGCUGAUGUC------GAGGCGA---CUGAAGUGCAUUUGGCAAAUAAGAAAAAUUGCAUA ..(((((.....((.....)).(((((.(((((((((((((((((....)))))).------..)))..---..))))))))...)))))............))))) ( -27.10) >DroEre_CAF1 128102 96 + 1 -----UGCACCCGCUUGAUGCAUU-----GCACUUUGGCGUGUUGCUGACGCCGCGGGCGA-GCAGCGAGUGCCGCAGUGCAUUUGGCAAAUAAGAAAAAUUGCAUA -----((((....((((.(((..(-----(((((.((((.(((((((..((((...)))))-))))))...)))).))))))....)))..))))......)))).. ( -36.50) >DroWil_CAF1 145452 77 + 1 -------CACCCGCUUGAUGCAUU-----GCACAUUGGCGUGUCGUU------------------GCCCAUGCCGCAGUGCAUUUGGCAAAUAAGAAAAAUUGCAUA -------.....(((.((((((((-----((.(((.((((......)------------------))).)))..)))))))))).)))................... ( -27.50) >DroAna_CAF1 130287 96 + 1 -----ACCACCCGCUUGAUGCAUU-----GUACUUUGGCGUGUUGCUGACGCCGCGGGCGA-GCUGCAAAUGCCGCAGUGCAUUUGGCAAAUAAGAAAAAUUGCAUA -----.......(((.((((((((-----((.....(((((.((((.(.((((...)))).-.).))))))))))))))))))).)))................... ( -32.30) >consensus _____GCCACCCGCUUGAUGCAUU_____GCACUUUGGCGUGUCGCUGACGCCGCGGGCGA_GCUGCGAAUGCCGCAGUGCAUUUGGCAAAUAAGAAAAAUUGCAUA .................(((((.......(((((.((((((.((((...................)))))))))).)))))((((..(......)..))))))))). (-15.95 = -16.84 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:58 2006