Locus 8835

Sequence ID 3R_DroMel_CAF1
Location 23,648,551 – 23,648,662
Length 111
Max. P 0.939833
window14185

overview

Window 5

Location 23,648,551 – 23,648,662
Length 111
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 92.75
Mean single sequence MFE -26.30
Consensus MFE -21.88
Energy contribution -21.52
Covariance contribution -0.36
Combinations/Pair 1.07
Mean z-score -2.65
Structure conservation index 0.83
SVM decision value 1.30
SVM RNA-class probability 0.939833
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23648551 111 - 27905053
UAACGGCAAGAAAUUGAAUUUUAAUUAGUAACGAGGAAUCUGUUACGCAUCAGUUUGUAUUUAAUUUAAUUUCUUAAUUAAAAUGCGUGAGCAUGU---------CGGCAUAAAAACCAA
...(((((((((((((((((.......(((((((....)).)))))(((......)))....))))))))))))).......((((....))))))---------))............. ( -27.90)
>DroVir_CAF1 151196 111 - 1
UAAUGGCAAGAAAUUGAAUUUUAAUUAGUAACGAGGAAUCUGUUACGCAUCAGUUUGUAUUUAAUUUAAUUUCUUAAUUAAAAUGCGCGGGCAUGU---------CGGCAUAAAACCCAA
...(((.(((((((((((((.......(((((((....)).)))))(((......)))....))))))))))))).......((((.(((.....)---------)))))).....))). ( -23.20)
>DroPse_CAF1 113234 111 - 1
UAAUGACAAGAAAUUGAAUUUUAAUUAGUAACGAGGAAUCUGUUACGCAUCAGUUUGUAUGUAAUUUAAUUUCUUAAUUAAAAUGCGAGAGCAUGU---------CUGCAUAAAAACCAA
....((((((((((((((((.......(((((((....)).)))))(((((.....).))))))))))))))))).......((((....))))))---------).............. ( -24.70)
>DroSim_CAF1 109000 110 - 1
U-ACGGCAAGAAAUUGAAUUUUAAUUAGUAACGAGGAAUCUGUUACGCAUCAGUUUGUAUUUAAUUUAAUUUCUUAAUUAAAAUGCGUGAGCAUGU---------CGGCAUAAAAACCAA
.-.(((((((((((((((((.......(((((((....)).)))))(((......)))....))))))))))))).......((((....))))))---------))............. ( -27.90)
>DroWil_CAF1 127787 120 - 1
UAAUGGCAAGAAAUUGAAUUUUAAUUAGUAACGAGGAAUCUGUUACGCAUCAGUUUGUAUUUAAUUUAAUUUCUUAAUUAAAAUGCGUGAGCAUGCGCCAAUCGCCUGUAUGAAAAUCAA
...(((((((((((((((((.......(((((((....)).)))))(((......)))....))))))))))))).......((((....))))..)))).................... ( -29.40)
>DroPer_CAF1 111530 111 - 1
UAAUGACAAGAAAUUGAAUUUUAAUUAGUAACGAGGAAUCUGUUACGCAUCAGUUUGUAUGUAAUUUAAUUUCUUAAUUAAAAUGCGAGAGCAUGU---------CUGCAUAAAAACCAA
....((((((((((((((((.......(((((((....)).)))))(((((.....).))))))))))))))))).......((((....))))))---------).............. ( -24.70)
>consensus
UAAUGGCAAGAAAUUGAAUUUUAAUUAGUAACGAGGAAUCUGUUACGCAUCAGUUUGUAUUUAAUUUAAUUUCUUAAUUAAAAUGCGUGAGCAUGU_________CGGCAUAAAAACCAA
.....(((((((((((((((.......(((((((....)).)))))(((......)))....))))))))))))).......((((....))))))........................ (-21.88 = -21.52 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:51 2006