Locus 8831

Sequence ID 3R_DroMel_CAF1
Location 23,642,544 – 23,642,636
Length 92
Max. P 0.571535
window14178

overview

Window 8

Location 23,642,544 – 23,642,636
Length 92
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 89.53
Mean single sequence MFE -28.50
Consensus MFE -24.13
Energy contribution -24.32
Covariance contribution 0.19
Combinations/Pair 1.04
Mean z-score -1.62
Structure conservation index 0.85
SVM decision value 0.08
SVM RNA-class probability 0.571535
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23642544 92 - 27905053
ACAAGCGCCAAAGUCGCCAAGUCUAACACGUGACUUCGUGUCAUUUUGCUGAAAUUUGGCGAAUGAGCUGAGCUGAAGGAAAAGGUCGCU----GC
.((..(((((((.(((.((((....(((((......)))))...)))).)))..)))))))..))(((.((.((........)).)))))----.. ( -26.70)
>DroSec_CAF1 104413 92 - 1
ACAAGCGCCAAAGUCGCCAAGUCUAACACGUGACUUCGUGUCAUUUUGCUGAAAUUUGGCGACUGAGCUGAGCUGAAGGAAAAGGUCGCU----GC
...((((((..(((((((((((.(..((.(((((.....)))))..))...).))))))))))).(((...))).........)).))))----.. ( -29.60)
>DroSim_CAF1 102569 92 - 1
ACAAGCGCCAAAGUCGCCAAGUCUAACACGUGACUUCGUGUCAUUUUGCUGAAAUUUGGCGACUGAGCUGAGCUGAAGGAAAAGGUCGCU----GC
...((((((..(((((((((((.(..((.(((((.....)))))..))...).))))))))))).(((...))).........)).))))----.. ( -29.60)
>DroEre_CAF1 104562 87 - 1
ACAAGCGCCAAAGUCGCCAAGUCUAACACGUGACUUCGUGUCAUUUUGCUGAAAUUUGGCGACUG-----AGCUGAAGGAAAAGGUCGCU----GC
...(((.....(((((((((((.(..((.(((((.....)))))..))...).)))))))))))(-----(.((........)).)))))----.. ( -27.00)
>DroYak_CAF1 108284 87 - 1
ACAAGCGCCAAAGUCGCCAAGUCUAACACGUGACUUCGUGUCAUUUUGCUGAAAUUUGGCGACUG-----AGCUGAAGGAAAAGGUCGCU----GC
...(((.....(((((((((((.(..((.(((((.....)))))..))...).)))))))))))(-----(.((........)).)))))----.. ( -27.00)
>DroAna_CAF1 105047 90 - 1
ACAAGCGCCAAAGUCGCCAAGUCUAACACGUGACUUCGUGUCAUUUGCAGAAAAUUUGGCGACCC------GCUUGCCGGGAAGGUUGCUGGAAGC
.((((((.....((((((((((....((.(((((.....))))).))......)))))))))).)------)))))((((........)))).... ( -31.10)
>consensus
ACAAGCGCCAAAGUCGCCAAGUCUAACACGUGACUUCGUGUCAUUUUGCUGAAAUUUGGCGACUG_____AGCUGAAGGAAAAGGUCGCU____GC
...((((((..(((((((((((.......(((((.....))))).........)))))))))))........(.....)....)).))))...... (-24.13 = -24.32 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:45 2006