| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,634,531 – 23,634,629 |
| Length | 98 |
| Max. P | 0.726833 |
| Location | 23,634,531 – 23,634,629 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 80.61 |
| Mean single sequence MFE | -24.52 |
| Consensus MFE | -19.00 |
| Energy contribution | -19.33 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.726833 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23634531 98 - 27905053 CACC-AAGACAUCUAUCAUAGCCC---GAGCAUUUGUCACGUGAGGGACAACGUGAUUUCAUUUUCCUGUCGCCAUAAAGGUGACACAUUGCAUUCG-------U-------CCUG ....-.............(((..(---(((((...(((((((........)))))))..........(((((((.....)))))))...)))..)))-------.-------.))) ( -23.80) >DroVir_CAF1 133564 92 - 1 CACU-CUCACAUCUAUCAUU---------ACAUUUGUCACGUGAGGGACAACGUGAUUUCAUUUUCCUGUCGCCAUAAAGGUGACACAUUGCAAUCG-------U-------CUGU ..((-(((((......((..---------.....))....)))))))(((...(((((.((......(((((((.....)))))))...)).)))))-------.-------.))) ( -21.00) >DroWil_CAF1 110256 109 - 1 ACACAUACACAUCUAUCAUAGCCAUAGGAGCAUUUGUCACGUGAAGGACAACGUGAUUUCAUUUUCCUGUCGCCAUAAAGGUGACACAUUGCAUUCG-------UAUUCCUCUUUG ....((((.................(((((.((..(((((((........)))))))...)).)))))((((((.....))))))...........)-------)))......... ( -25.00) >DroMoj_CAF1 140193 92 - 1 CAGU-CGUACAUCUAUCAUU---------ACAUUUGUCACGUGAGGGACAACGUGAUUUCAUUUUCCUGUCGCCAUAAAGGUGACACAUUGCAUACG-------U-------CUAU .((.-((((........(((---------((..(((((.(....).))))).)))))..........(((((((.....))))))).......))))-------.-------)).. ( -24.10) >DroAna_CAF1 96301 105 - 1 CCGG-CUCACAUCUAUCAUAGUCC---GGGCAUUUGUCACGUGAGGGACAACGUGAUUUCAUUUUCCUGUCGCCAUAAAGGUGACACAUUGCAUUCACCGACGCU-------CUCG ((((-((............)).))---))((..(((((.(....).))))).((((...((......(((((((.....)))))))...))...))))....)).-------.... ( -27.40) >DroPer_CAF1 96195 104 - 1 CCACGGUCACAUCUAUCAUAGCCA---AAGCAUUUGUCACGUGAGGGACAACGUGAUUUCAUUUUCCUGUCGCCAUAAAGGUGACACAUUGCAUUCG-------UAUUGC--CUUG ....((((((..........((..---..))..(((((.(....).))))).)))))).........(((((((.....)))))))((..(((....-------...)))--..)) ( -25.80) >consensus CAAC_CUCACAUCUAUCAUAGCC____GAGCAUUUGUCACGUGAGGGACAACGUGAUUUCAUUUUCCUGUCGCCAUAAAGGUGACACAUUGCAUUCG_______U_______CUUG .............................(((...(((((((........)))))))..........(((((((.....)))))))...)))........................ (-19.00 = -19.33 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:44 2006