| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,985,673 – 2,985,767 |
| Length | 94 |
| Max. P | 0.689877 |
| Location | 2,985,673 – 2,985,767 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 81.95 |
| Mean single sequence MFE | -34.62 |
| Consensus MFE | -18.02 |
| Energy contribution | -18.17 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.689877 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2985673 94 - 27905053 GUGGCUUAAAAC-CAGCAAAAAGUGUAGCAGCUGCCAUUGUGUUGCUAUUGCUG------------------UUGCCGUUUAUUGUCAAAGCGGUUAAGCGACAUGCCACCAA (((((.......-.(((((..((((..((....))))))...))))).(((((.------------------..(((((((.......)))))))..)))))...)))))... ( -30.20) >DroSec_CAF1 32106 95 - 1 GUGGCUUAAAAGCCAGCAAAAAGUGUAGCAGCUGCCAUUGUGUUGCUAUUGCUA------------------UUGCCGUUUAUUGUCAAAGCGGUUAAGCGACAUGCCACCAA (((((.....(((.((((...((((..((....)))))).))))))).(((((.------------------..(((((((.......)))))))..)))))...)))))... ( -29.20) >DroSim_CAF1 30125 95 - 1 GUGGCUUAAAACCGAGCAAAAAGUGUAGCAGCUGCCAUUGUGUUGCUAUUGCUA------------------UUGCCGUUUAUUGUCAAAGCGGUUAAGCGACAUGCCACCAA (((((.........(((((..((((..((....))))))...))))).(((((.------------------..(((((((.......)))))))..)))))...)))))... ( -29.20) >DroEre_CAF1 31714 106 - 1 GUGGCCCAAAC-CCAACAAAAAGUGUAGCAGCUGCCAUUGUGGUGCUAUUGCUA------UUGCUGGGGCUGUUGCCGUUUAUUGUCAAAGCGGUUAAGCGACAUGCCACCAA (((((.....(-(((.(((.....((((((.(..(....)..))))))).....------))).))))(((...(((((((.......)))))))..))).....)))))... ( -37.60) >DroYak_CAF1 39859 112 - 1 GUGGCCCAAGC-CCAACAAAAAGUGUAGCAGCUGCCAUUGUGGUGGUAUUGCUAUUGCUGUUGCUGCGGCUGUUGCCGUUUAUUGUCAAAGCGGUUAGGCGACAUGCCACCAA (((((...(((-(((.(((.....(((((((.((((((....))))))))))))).....))).)).))))((((((....(((((....)))))..))))))..)))))... ( -44.30) >DroAna_CAF1 24743 92 - 1 GUGGCCAAAGCCCCGAAAAAAUGUGUAGCAGCUGCCAUUGUGGGGCUU-UGUU--------------------GGCUUUUUAUUGUCAAAGCAGUUAAGCGACAUGCCACCAA (((((((((((((((....((((.((((...)))))))).))))))))-))..--------------------.((((...(((((....))))).)))).....)))))... ( -37.20) >consensus GUGGCCUAAAACCCAACAAAAAGUGUAGCAGCUGCCAUUGUGGUGCUAUUGCUA__________________UUGCCGUUUAUUGUCAAAGCGGUUAAGCGACAUGCCACCAA (((((....................((((((..((.........))..))))))....................(((((((.......)))))))..........)))))... (-18.02 = -18.17 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:31 2006