Locus 8829

Sequence ID 3R_DroMel_CAF1
Location 23,630,613 – 23,630,707
Length 94
Max. P 0.771203
window14176

overview

Window 6

Location 23,630,613 – 23,630,707
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 90.43
Mean single sequence MFE -30.05
Consensus MFE -23.79
Energy contribution -25.85
Covariance contribution 2.06
Combinations/Pair 1.06
Mean z-score -2.76
Structure conservation index 0.79
SVM decision value 0.53
SVM RNA-class probability 0.771203
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23630613 94 - 27905053
GCCGGUGGGUGUUGGCAAUUGAAUUAAUUCAGGGCUCACUUGGGGCUUAGGCCCAGAAAGUGGGCUUUAAUAUUUAAGUGCAUUUUAACACUUU
......(((((((((((.((((((..(((.(((((((((((.((((....))))...)))))))))))))))))))).)))....)))))))). ( -33.90)
>DroSec_CAF1 88255 94 - 1
GCCGGUGGGUGUUGGCAAUUGAAUUAAUUCAGGGCUCACUUGGGGCUUAGGCCCAGAAAGUGGGCUUUAAUAUUUAAGUGCAUUUUAACACUUU
......(((((((((((.((((((..(((.(((((((((((.((((....))))...)))))))))))))))))))).)))....)))))))). ( -33.90)
>DroSim_CAF1 91133 94 - 1
GCCGGUGGGUGUUGGCAAUUGAAUUAAUUCAGGGCUCACUUGGGGCUUAGGCCCAGAAAGUGGGCUUUAAUAUUUAAGUGCAUUUUAACACUUU
......(((((((((((.((((((..(((.(((((((((((.((((....))))...)))))))))))))))))))).)))....)))))))). ( -33.90)
>DroEre_CAF1 92772 94 - 1
GCCGGUGGGUGUUGGCAAUUGAAUUAAUUCGGGGCUCACUUGAGGCUUAGGCACAGAAAGCGGGCUUUAAUAUUUAAGUGCAUUUUAACACUUU
......(((((((((((.((((((....(..((((((.(((...((....)).....))).))))))..).)))))).)))....)))))))). ( -23.70)
>DroYak_CAF1 95612 94 - 1
GCCAAUGGGUGCUGGCAAUUGAAUUAAUUCAGGGCUCACUUGGGGCUUAGGCCCAGAAAGUGGGCUUUAAUAUUUAAGUGCAUUUUAACACUUU
((((........))))..............(((((((((((.((((....))))...))))))))))).......(((((........))))). ( -31.00)
>DroAna_CAF1 92330 92 - 1
AUUGGGGCCUGUGAGCAAUUGAAUUAAUUCAGGGCUCAGUGGGGAAUUGGGCCAA--AAAUAUGCUUUAAUAUUUAAGUGCAUUUUAACACUUA
((((((((.(((......(((((....)))))((((((((.....))))))))..--..))).))))))))...((((((........)))))) ( -23.90)
>consensus
GCCGGUGGGUGUUGGCAAUUGAAUUAAUUCAGGGCUCACUUGGGGCUUAGGCCCAGAAAGUGGGCUUUAAUAUUUAAGUGCAUUUUAACACUUU
......(((((((((((.((((((..(((.(((((((((((.((((....))))...)))))))))))))))))))).)))....)))))))). (-23.79 = -25.85 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:42 2006