| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,626,509 – 23,626,607 |
| Length | 98 |
| Max. P | 0.867421 |
| Location | 23,626,509 – 23,626,607 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 72.45 |
| Mean single sequence MFE | -28.42 |
| Consensus MFE | -14.25 |
| Energy contribution | -15.75 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.867421 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23626509 98 - 27905053 CAAAAGGCGCUGCUGCAACAAUGCGAGCAUUGGCCAUAUUUGAAUUGGUCAUGUAUGUUUUUGUUUU--------------UUGUGUGCCUGUGCCUGUAUUUAUGUGCAUA----- ....((((((.((((((((((.(((.((((.(((((.........))))))))).)))..))))...--------------.)))).))..))))))((((....))))...----- ( -27.90) >DroSec_CAF1 84217 91 - 1 CAAAAGGCGCUGCUGCAACAAUGCGAGCAUUGGCCAUAUUUGAAUUGGUCGUGUAUGUUUUUGUGU---------------GCCUG------CGCCUGUGUUUAUGUGCAUA----- ....((((((.((.(((.(((.(((.((((.(((((.........))))))))).)))..))))))---------------))..)------)))))((((......)))).----- ( -29.80) >DroSim_CAF1 86667 97 - 1 CAAAAGGCGCUGCUGCAACAAUGCGAGCAUUGGCCAUAUUUGAAUUGGUCGUGUAUGUUUUUGUGU---------------GCCUGUGCCUGUGCCUGUGUUUAUGUGCAUA----- ....((((((.((.(((((((.(((.((((.(((((.........))))))))).)))..)))).)---------------))....))..))))))((((......)))).----- ( -29.50) >DroEre_CAF1 88725 91 - 1 CAAAAGGCGCUGCUGCAACAAUGCGAGCAUUGGCCAUAUUUGAAUUGGUCGUGUAUGUUUGGAUGU---------------G-------CUGUGCCAGUGUUUAUGUGCUUAU---- ....((((((....(((....)))((((((((((((((((..(((...........)))..)))))---------------)-------....))))))))))..))))))..---- ( -29.50) >DroYak_CAF1 91403 83 - 1 CAAAAGGCGCUGCUGCAACAAUGCGAGCAUUGGCCAUAUUUGAAUUGGUCGUG------------U---------------G-------CUGUGCCUCUGUUUAUGUGUUUAUAUCU ....((((((...((((....))))(((((((((((.........)))))).)------------)---------------)-------)))))))).................... ( -23.00) >DroAna_CAF1 88052 100 - 1 CAA-AGGCG---CUGCAACAAUGCCGGCUUUGGCCAUAUUUGAAUGG----CCUAUGUUUGUGUGUUACACUACUCUACAGGCAUAUGGCUA--UCUGUGUUUGUGAGUG------- ..(-((((.---(.(((....))).))))))((((((......))))----)).......(((.....)))(((((.(((((((((......--..))))))))))))))------- ( -30.80) >consensus CAAAAGGCGCUGCUGCAACAAUGCGAGCAUUGGCCAUAUUUGAAUUGGUCGUGUAUGUUUUUGUGU_______________GC_UG___CUGUGCCUGUGUUUAUGUGCAUA_____ ....(((((((((((((....))).)))).((((((.........))))))........................................)))))).................... (-14.25 = -15.75 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:40 2006