Locus 8826

Sequence ID 3R_DroMel_CAF1
Location 23,624,875 – 23,624,989
Length 114
Max. P 0.551555
window14172

overview

Window 2

Location 23,624,875 – 23,624,989
Length 114
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 88.70
Mean single sequence MFE -32.66
Consensus MFE -21.06
Energy contribution -21.12
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -2.16
Structure conservation index 0.65
SVM decision value 0.04
SVM RNA-class probability 0.551555
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23624875 114 + 27905053
GUAAGUGAGU--AAGUGAGUGAAUGCAGCAGGACCUCGGUUGCAAGUUGGCUGGGCCGUAAUAAAUGCUUAUGAAGUCAUUUACAUGCGCAUUCAAAAAGCGUAUUUAUUUGCAAU
((((((((((--(.((...(((((((.(((((.((.(((((.......)))))))))....((((((((.....)).))))))..))))))))))....)).)))))))))))... ( -37.20)
>DroSec_CAF1 82558 114 + 1
GUGAGUGAGU--AAGUGAGCGAGUGCAGCAAGACCUCGGUUGCAAGUUGGCUGGGCCGUAAUAAAUGCUUAUGAAGUCAUUUACAUGCGCAUUCAAAAAGCGUAUUUAUUUGCAAU
((((((((.(--..(((((((..((((((.........))))))....(((...)))........)))))))..).))))))))((((((.........))))))........... ( -32.30)
>DroSim_CAF1 85040 95 + 1
GUGAGUG---------------------CAGGACCUCGGUUGCAAGUUGGCUGGGCCGUAAUAAAUGCUUAUGAAGUCAUUUACAUGCGCAUUCAAAAAGCGUAUUUAUUUGCAAU
.((((((---------------------(.((.((.(((((.......)))))))))(((.((((((((.....)).))))))..))))))))))....(((........)))... ( -25.60)
>DroYak_CAF1 89623 116 + 1
GUGAGUGAGUGUGAGUGAGUGAGUGCAGCAGGACCUCGGUAGCAAGUUGGCUGGGCCGUAAUAAAUGCUUAUGAAGUCAUUUACAUGCGCAUUCAAAAAGCGUAUUUAUUUGCAAU
.((((((.((((((((((.(..(((.((((......(((((((......)))..)))).......)))))))..).))))))))))...))))))....(((........)))... ( -35.52)
>consensus
GUGAGUGAGU__AAGUGAGUGAGUGCAGCAGGACCUCGGUUGCAAGUUGGCUGGGCCGUAAUAAAUGCUUAUGAAGUCAUUUACAUGCGCAUUCAAAAAGCGUAUUUAUUUGCAAU
((((((((.......................(((.(((...(((...((((...)))).......)))...))).)))......((((((.........))))))))))))))... (-21.06 = -21.12 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:39 2006