Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 23,620,768 – 23,620,863 |
Length | 95 |
Max. P | 0.517494 |
Location | 23,620,768 – 23,620,863 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 78.83 |
Mean single sequence MFE | -21.02 |
Consensus MFE | -14.32 |
Energy contribution | -14.52 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.12 |
Mean z-score | -1.46 |
Structure conservation index | 0.68 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.517494 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23620768 95 + 27905053 CGACCGCACAGCUAC-CGCAUAACAUAAUGUUUUGCGGUUGGAUUUGGUCCAGCCAU-------CCAUUCAAUCCG-CCGCCUGAUCUGGCCAUAACCCAAAAC .....((......((-((((.(((.....))).))))))((((..(((.....))))-------)))........)-).(((......)))............. ( -23.60) >DroSec_CAF1 78527 97 + 1 CGACCGCACAGCCACCCGCAUAACAUAAUGUUUUGCGGUUGGAUUUGGUCCAGCCAU-------CCAUUCAACCCGACCGCCUGAUCUGACCAUAACCCAAAAC .(((((.....(((.(((((.(((.....))).))))).)))...)))))(((.((.-------.(..((.....))..)..))..)))............... ( -20.90) >DroSim_CAF1 80963 96 + 1 CGACCGCACAGCCAC-CGCAUAACAUAAUGUUUUGCGGUUGGAUUUGGUCCAGCCAU-------CCAUUCAACCCGCCCGCUUGAUCUGACCAUAACCCAAAAC .(((((.....((((-((((.(((.....))).))))).)))...)))))......(-------(...((((.(.....).))))...)).............. ( -20.60) >DroYak_CAF1 85418 103 + 1 CUACCGCACAGCCAC-CGCAUAACAUAAUGUUUUGCGGUUGGAUUUGCUCCAGCCAGCCACCAACCAUUCAAUCCACCGCCCUGAUAUGACCAGAACCCAUAAC .....(((...((((-((((.(((.....))).))))).)))...))).................................(((.......))).......... ( -19.40) >DroAna_CAF1 82520 84 + 1 UGACCGCACAGCCAC-CGCAUAACAUAAUGUUUUGCAGUUGGAUUUGGGUGAGCCAC---------ACUCCCCCGCACCACUUGCACUUGCACU---------- .....(((...((((-.(((.(((.....))).))).).)))....(((.(((....---------.))).)))(((.....)))...)))...---------- ( -20.60) >consensus CGACCGCACAGCCAC_CGCAUAACAUAAUGUUUUGCGGUUGGAUUUGGUCCAGCCAU_______CCAUUCAACCCGACCGCCUGAUCUGACCAUAACCCAAAAC ........(((......(((.(((.....))).)))(((((((.....)))))))..........................))).................... (-14.32 = -14.52 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:37 2006