| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,616,654 – 23,616,745 |
| Length | 91 |
| Max. P | 0.985591 |
| Location | 23,616,654 – 23,616,745 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 71.23 |
| Mean single sequence MFE | -26.19 |
| Consensus MFE | -15.11 |
| Energy contribution | -17.61 |
| Covariance contribution | 2.50 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.58 |
| SVM decision value | 2.01 |
| SVM RNA-class probability | 0.985591 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23616654 91 + 27905053 GGUGGCUCAACUUUGGGUCCU----GGUUUUGUGGCAUGCAAAGUUGCUCAUCCAACCACUCAUUCCCUCACCCACUGAGCCACCCA----CUUGGCCA (((((((((....(((((..(----((((..((((((........))).)))..)))))...........))))).)))))))))..----........ ( -30.72) >DroSec_CAF1 77482 91 + 1 GGUGGCUCAACUUUGGGUCCU----GGUUUUGUGGCAUGCAAAGUUGCUCAUCCAACCACUCAUUCCCUCACCCACUGAGCCACCCA----CUUGGCCA (((((((((....(((((..(----((((..((((((........))).)))..)))))...........))))).)))))))))..----........ ( -30.72) >DroEre_CAF1 81806 87 + 1 GGUGGCUCAACUUUGGGUCCU----GGUUUUGUGGCAUGCAAAGUUGCUCAUCCAACCACUCAUUCCUCCACCCACUUGGCCAGCCA--------GCCA ((((((.(((...(((((...----((....((((...(((....)))........)))).....))...))))).))))))).)).--------.... ( -24.70) >DroAna_CAF1 81496 83 + 1 ACUGCCUCAACUUCUGGCCGUGGUUGGUUUUGCGGCAUUCAAAGUUCUUCGC----------------UGGCCCACAGCCCCAUCCUGAUCCUUAUGCA ...((...(((((...((((..(......)..)))).....)))))....((----------------((.....)))).................)). ( -18.60) >consensus GGUGGCUCAACUUUGGGUCCU____GGUUUUGUGGCAUGCAAAGUUGCUCAUCCAACCACUCAUUCCCUCACCCACUGAGCCACCCA____CUUGGCCA (((((((((....(((((.......((((..((((((........))).)))..))))............))))).))))))))).............. (-15.11 = -17.61 + 2.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:37 2006