Locus 8822

Sequence ID 3R_DroMel_CAF1
Location 23,615,051 – 23,615,146
Length 95
Max. P 0.979647
window14167 window14168

overview

Window 7

Location 23,615,051 – 23,615,146
Length 95
Sequences 3
Columns 103
Reading direction forward
Mean pairwise identity 81.27
Mean single sequence MFE -20.80
Consensus MFE -14.44
Energy contribution -14.33
Covariance contribution -0.11
Combinations/Pair 1.10
Mean z-score -1.56
Structure conservation index 0.69
SVM decision value -0.02
SVM RNA-class probability 0.522148
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23615051 95 + 27905053
UGGGAAAGUGCCCCUAGAAGUUCCCUUUUCUGUUUUUUUUUUUUUU--------AUUUCAUUCCUUGACCCCACUGGGGCAUAGUUUGAUUUAAUUCGGGACC
...........(((((((((......))))))............((--------(..(((..(..((.((((...))))))..)..)))..)))...)))... ( -19.30)
>DroSim_CAF1 78331 90 + 1
UGGGCAAGUGCCCCUAGAAGUCCCCUUUUCUG-----UUUUUUUUU--------AUUUCAUUCCUUGACCCCACUGGGGCAUAGUUUGAUUUAACUCGGGACC
.((((....))))......((((((......)-----.......((--------(..(((..(..((.((((...))))))..)..)))..)))...))))). ( -24.60)
>DroYak_CAF1 82665 98 + 1
UGCAAAAGUGCCCCUGGAAGUCCCAUUUUUUUUUU-----UUUUGUAUUUUUGGUUUUCAUUCCUUAACCCCACUGGGGCAUAGUUUGAUUUAAUUCGGGACC
..((((.((((((((((.....)))..........-----............((((..........)))).....)))))))..))))............... ( -18.50)
>consensus
UGGGAAAGUGCCCCUAGAAGUCCCCUUUUCUGUUU__UUUUUUUUU________AUUUCAUUCCUUGACCCCACUGGGGCAUAGUUUGAUUUAAUUCGGGACC
.......(((((((.(((((......)))))..........................(((.....))).......)))))))..(((((......)))))... (-14.44 = -14.33 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 23,615,051 – 23,615,146
Length 95
Sequences 3
Columns 103
Reading direction reverse
Mean pairwise identity 81.27
Mean single sequence MFE -22.23
Consensus MFE -18.15
Energy contribution -17.93
Covariance contribution -0.22
Combinations/Pair 1.06
Mean z-score -2.44
Structure conservation index 0.82
SVM decision value 1.84
SVM RNA-class probability 0.979647
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23615051 95 - 27905053
GGUCCCGAAUUAAAUCAAACUAUGCCCCAGUGGGGUCAAGGAAUGAAAU--------AAAAAAAAAAAAAACAGAAAAGGGAACUUCUAGGGGCACUUUCCCA
.(((((........(((..((.((((((...)))).)).))..)))...--------...............(((..((....))))).)))))......... ( -20.50)
>DroSim_CAF1 78331 90 - 1
GGUCCCGAGUUAAAUCAAACUAUGCCCCAGUGGGGUCAAGGAAUGAAAU--------AAAAAAAAA-----CAGAAAAGGGGACUUCUAGGGGCACUUGCCCA
((((((((......))...((.((((((...)))).)).))........--------.........-----........)))))).....((((....)))). ( -25.90)
>DroYak_CAF1 82665 98 - 1
GGUCCCGAAUUAAAUCAAACUAUGCCCCAGUGGGGUUAAGGAAUGAAAACCAAAAAUACAAAA-----AAAAAAAAAAUGGGACUUCCAGGGGCACUUUUGCA
.(((((........(((..((..(((((...)))))..))...))).................-----..........(((.....))))))))......... ( -20.30)
>consensus
GGUCCCGAAUUAAAUCAAACUAUGCCCCAGUGGGGUCAAGGAAUGAAAU________AAAAAAAAA__AAACAGAAAAGGGGACUUCUAGGGGCACUUUCCCA
.(((((........(((..((..(((((...)))))..))...))).................................((.....)).)))))......... (-18.15 = -17.93 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:35 2006