Locus 8821

Sequence ID 3R_DroMel_CAF1
Location 23,604,882 – 23,604,986
Length 104
Max. P 0.746926
window14166

overview

Window 6

Location 23,604,882 – 23,604,986
Length 104
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 86.16
Mean single sequence MFE -32.02
Consensus MFE -26.08
Energy contribution -27.92
Covariance contribution 1.83
Combinations/Pair 1.07
Mean z-score -2.13
Structure conservation index 0.81
SVM decision value 0.46
SVM RNA-class probability 0.746926
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23604882 104 - 27905053
UCUCCCAUCGAGGAGUACAAGCUGUCCUUCCGCAAGUUGCCGCAAGGACACGAGGUCGUUGGCAAUGCCAUCGACUCGUCCUCCUCC---UCCUCGUCGAUGUCCUC
.....((((((.(((........(((((((.((.....)).).))))))(((((.(((.((((...)))).))))))))........---..))).))))))..... ( -37.80)
>DroSec_CAF1 65642 104 - 1
UCUCCCAUCGAGGAGUACAAGCUGUCCUACCGCAAGUUGCCGCAAGGACACGAGGUCGUUGGCAAUGCCAUCGACUCGCCCUCCUCC---UCCUCGUCGAUGUCCUC
.....((((((.(((.......((((((.(.((.....)).)..))))))((((.(((.((((...)))).))))))).........---..))).))))))..... ( -34.70)
>DroSim_CAF1 67574 104 - 1
UCUCCCAUCGAGGAGUACAAGCUGUCCUUCCGCAAGUUGCCGCAAGGACACGAGGUCGUUGGCAAUGCCAUCGACUCGCCCUCCUCC---UCCUCGUCGAUGUCCUC
.....((((((.(((.......((((((((.((.....)).).)))))))((((.(((.((((...)))).))))))).........---..))).))))))..... ( -37.10)
>DroWil_CAF1 83055 93 - 1
UCACCCAUCGAAGAGUACAAACUGUCCUUCCGCAAGGCGCCCCAAGGACAUGAGGUCGUUGACAAUGCCAUUGACUCGCAAUCCUCC---CACCA---------C--
............((((.(((..(((((((((....))......)))))))...((.(((.....))))).)))))))..........---.....---------.-- ( -19.70)
>DroYak_CAF1 71582 104 - 1
UCUCCCAUCGAGGAGUACAAGCUGUCCUUCCGCAAGUUGCCGCAAGGACACGAGGUCGUUGGCAAUGCCAUCGACUCGCCCUCAUCC---UCCUCAUCGAUGUCCUC
.....((((((((((.......((((((((.((.....)).).)))))))((((.(((.((((...)))).)))))))........)---)))))...))))..... ( -35.90)
>DroAna_CAF1 69913 107 - 1
UCUCCCAUCGAAGAGUAUAAGUUGUCCUUCCGCAAGCUGCCACAAGGACACGAGGUCGUUGGCAACUCCAUUGACUCCCCAUCCUCUUCGUCCACCUCGAUGUCCUC
.....((((((((((.....((.((((((..((.....))...))))))))(..((((.(((.....))).))))..).....))))))(.......)))))..... ( -26.90)
>consensus
UCUCCCAUCGAGGAGUACAAGCUGUCCUUCCGCAAGUUGCCGCAAGGACACGAGGUCGUUGGCAAUGCCAUCGACUCGCCCUCCUCC___UCCUCGUCGAUGUCCUC
.....((((((.(((.......(((((((..((.....))...)))))))((((.(((.((((...)))).)))))))..............))).))))))..... (-26.08 = -27.92 +   1.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:33 2006