| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,603,919 – 23,604,023 |
| Length | 104 |
| Max. P | 0.760279 |
| Location | 23,603,919 – 23,604,023 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 90.03 |
| Mean single sequence MFE | -30.13 |
| Consensus MFE | -23.87 |
| Energy contribution | -24.73 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.760279 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23603919 104 - 27905053 CU------UUCUGUUGCUGGCUGUAUGCAUAAUAAUUUGGUAUUAUGCCCUGAUUUCGACGAUAAUCCACAAAAAUCACAAUGAAGCUGCAGCAGGCAAACAGA-AUGGCA ..------((((((((((.((((((.((((((((......))))))))..((((((................)))))).........)))))).))).))))))-)..... ( -27.89) >DroSec_CAF1 64684 104 - 1 CU------UUGUGUUGCUGGCUGUAUGCAUAAUAAUUUGGUAUUAUGCGCUGCUUUCGCCGAUAAUCCACAAAAAUCACAAUGAAGCUGCAGCGGGCAAACAGA-AAGGCA ((------((.(((((((.((((((.((((((((......))))))))...(((((....(((...........))).....))))))))))).))).)))).)-)))... ( -32.80) >DroSim_CAF1 66608 104 - 1 CU------UUCUGUUGCUGGCUGUAUGCAUAAUAAUUUGGUAUUAUGCGCUGCUUUCGCCGAUAAUCCACAAAAAUCACAAUGAAGCUGCAGCGGGCAAACAGA-AAGGCA ((------((((((((((.((((((.((((((((......))))))))...(((((....(((...........))).....))))))))))).))).))))))-)))... ( -36.90) >DroEre_CAF1 68827 104 - 1 CC------UUCUGUUGCUGGCUGUAUGCAUAAUAAUUUGGCAUUAUGCGCUGCUUUCGCCGAUAAUCCACAAAAAUCACAAUGAUGCUGCAGCACGCAAACAGU-AAGGCA ((------(((((((((..((((((.((.........(((.(((((.((..((....)))))))))))).....(((.....)))))))))))..)).))))).-)))).. ( -29.10) >DroYak_CAF1 70569 111 - 1 CUUUGCAUUUCUGUUGCUGGCUGUAUGCAUAAUAAUUUGGUAUUAUGCGCUGCUUUCGCCGAUAAUCCACAAAAAUCACAAUGAAGCUGCAGCACGCAAACAGUUAAGGCA ...(((....(((((((..((((((.((((((((......))))))))...(((((....(((...........))).....)))))))))))..)).))))).....))) ( -29.00) >DroAna_CAF1 69079 104 - 1 CU------UUAUGUUGCUCGCUGCAUGCAUAAUAAUUUGGUAUUAAGCUCUGCUUUCGCUGAUAAUCCACAAAAAUCCCAAUAAGGCUGCAGCAAGCACACAAA-AAGACA ((------((.(((((((.((((((.((.........(((.((((...((.((....)).))))))))).........(.....))))))))).)))).))).)-)))... ( -25.10) >consensus CU______UUCUGUUGCUGGCUGUAUGCAUAAUAAUUUGGUAUUAUGCGCUGCUUUCGCCGAUAAUCCACAAAAAUCACAAUGAAGCUGCAGCAGGCAAACAGA_AAGGCA ..........((((((((.((((((.((((((((......))))))))...(((((....(((...........))).....))))))))))).)))).))))........ (-23.87 = -24.73 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:32 2006