| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,603,533 – 23,603,637 |
| Length | 104 |
| Max. P | 0.668302 |
| Location | 23,603,533 – 23,603,637 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 85.53 |
| Mean single sequence MFE | -22.03 |
| Consensus MFE | -16.26 |
| Energy contribution | -16.26 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.668302 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23603533 104 - 27905053 UCUUUGAUUGGUGAUCAUCUUC---GCUGCUCAUCUGGGUAAACAUUAACCACACCACAGGAUCGUGGGAUCUUCAUCAUUGUUACCUUAAACCACAUCAAAAGUCC ..((((((((((((((......---..(((((....))))).............((((......))))))))..((....)).........)))).))))))..... ( -20.10) >DroSec_CAF1 64292 107 - 1 UCUUUGAUUAGUGAUCACCCUCGUCGUUCCUCAUCUGGGUAUCAAUUUACCACACCACAGGAUCGUGGGAUCCUCAUUUUCAAUACCUUAAACCGCAUCAAAAGUCC ...((((..(((((...(((.((....((((....((((((......)))).))....)))).)).)))....))))).))))........................ ( -21.00) >DroSim_CAF1 66222 104 - 1 UCUUUGAGUAGUGAUCACCCUC---GUUCCUCAUCUGGGUAUCAACUUACCCCACCACAGGAUCGUGGGAUCCUCAUUUUCAAUACCUUAAACCGCAUCAAAACUCC ...(((((.(((((...(((.(---(.((((.....(((((......)))))......)))).)).)))....))))))))))........................ ( -25.00) >consensus UCUUUGAUUAGUGAUCACCCUC___GUUCCUCAUCUGGGUAUCAAUUUACCACACCACAGGAUCGUGGGAUCCUCAUUUUCAAUACCUUAAACCGCAUCAAAAGUCC .....((((..((((..........(.((((....((((((......)))).))....)))).)((((........................))))))))..)))). (-16.26 = -16.26 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:31 2006