Locus 8814

Sequence ID 3R_DroMel_CAF1
Location 23,572,473 – 23,572,590
Length 117
Max. P 0.886967
window14149

overview

Window 9

Location 23,572,473 – 23,572,590
Length 117
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 78.70
Mean single sequence MFE -49.20
Consensus MFE -33.91
Energy contribution -34.05
Covariance contribution 0.14
Combinations/Pair 1.21
Mean z-score -1.76
Structure conservation index 0.69
SVM decision value 0.94
SVM RNA-class probability 0.886967
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23572473 117 + 27905053
ACGGCGACAGUAAAACGACCGAAUGGUGGACGGACCGGCGGUGGGGGCUCCCACAUCCACCUGUGGCAGUUCCUCAAGGAGCUGCUGGCUUCGCCCCAGGUGAACGGCACAGCCAUC
.(((((.........)).)))...(((((..(..(((...(((((....)))))...((((((.(((((((((....)))))))))(((...))).))))))..)))..)..))))) ( -50.00)
>DroPse_CAF1 33463 114 + 1
UCCACUCCUGUGAAGCGCACUAGUGGCGGACGCACUGGCGGCG---GCUCCCACAUCCAUCUGUGGCAGUUCCUCAAGGAGCUGCUGGCAUCGCCGCAGGUGAACGGCACAGCCAUA
.(((((..((((...))))..)))))......((((.((((((---(..((((((......))))((((((((....)))))))).))..))))))).))))...(((...)))... ( -48.70)
>DroGri_CAF1 48242 114 + 1
ACGCCCACACCCAAACGCCCUGGAGGCACUCGCAAUGGCGGCG---GCUCCCACAUCCAUUUGUGGCAGUUUCUUAAGGAGUUGCUUUCAUCGCCGCAGGUGAAUGGCACGGCCAUA
..(((..((((....((((.(((((...))).))..))))(((---((...((((......))))(((..(((....)))..))).......))))).))))...)))......... ( -39.20)
>DroYak_CAF1 37569 117 + 1
ACGGCUACAGUGAAACGCGUCAAUGGUGGACGAACAGGCGGCGGUGGUUCGCACAUUCACCUGUGGCAGUUCCUCAAGGAGCUGCUGGCCUCGCCGCAGGUGAACGGCACGGCCAUC
..((((...(((((.((((((....((......)).))).)))....))))).(.((((((((((((((((((....)))))))))(((...)))))))))))).)....))))... ( -50.30)
>DroMoj_CAF1 54255 111 + 1
GCGCCGG---CCAAGCGCUCGGGCGGCGCACGCAACGGCGGCA---GUUCGCACAUUCACCUGUGGCAGUUCCUCAAGGAGCUGCUCGCGGCGCCGCAAGUGAACGGCACGGCCAUA
(.(((((---((...((((...(((((((.(((....((((..---..))))............(((((((((....))))))))).)))))))))).))))...))).)))))... ( -58.30)
>DroPer_CAF1 33727 114 + 1
UCCACUCCUGUGAAGCGCACUAGUGGCGGACGCACUGGCGGCG---GCUCCCACAUCCAUCUGUGGCAGUUCCUCAAGGAGCUGCUGGCAUCGCCGCAGGUGAACGGCACAGCCAUA
.(((((..((((...))))..)))))......((((.((((((---(..((((((......))))((((((((....)))))))).))..))))))).))))...(((...)))... ( -48.70)
>consensus
ACGACUACAGUGAAACGCACUAGUGGCGGACGCACUGGCGGCG___GCUCCCACAUCCACCUGUGGCAGUUCCUCAAGGAGCUGCUGGCAUCGCCGCAGGUGAACGGCACAGCCAUA
......................(((((..........((((((...(((..((((......))))((((((((....)))))))).)))..))))))..(((.....))).))))). (-33.91 = -34.05 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:18 2006