Locus 8813

Sequence ID 3R_DroMel_CAF1
Location 23,569,795 – 23,569,897
Length 102
Max. P 0.509771
window14148

overview

Window 8

Location 23,569,795 – 23,569,897
Length 102
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 79.83
Mean single sequence MFE -42.73
Consensus MFE -28.46
Energy contribution -30.18
Covariance contribution 1.73
Combinations/Pair 1.30
Mean z-score -1.22
Structure conservation index 0.67
SVM decision value -0.05
SVM RNA-class probability 0.509771
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23569795 102 - 27905053
GGAGAGGGUGGCAGGAUGUGCAGCUCCUGCUUGAUGCUAACCGCCUCCAGCGAGGGCGAUGGGCUGUUCAGACUGUCGUAGCUACCGCCAAAUCUGCCA-AGC--
(((((.((((((((..((.(((((((..((.....))....(((((.......)))))..))))))).))..))).........)))))...))).)).-...-- ( -36.70)
>DroVir_CAF1 47146 102 - 1
GGCGAGGGUGGCAAUAUAUGUAGCUCCUGCUUAAUGCUACUGGCAUCCAGCGAGGGACACGGACUGCUCAGGCAGUCGUAGCUGCCGUUGUACUUGCCG-UAG--
((((((....(((((....((((((((((((..((((.....))))..))).)))......((((((....))))))..)))))).))))).)))))).-...-- ( -41.80)
>DroPse_CAF1 31113 105 - 1
GGGGAGGGCGGCAGGAUGUGCAGCUCCUGCUUGAUGCUCGAGGCAUCCAACGAGGGCGAGGGGCUGCUCAGACAGUCGUAGCUGCCGUGGAACUUGCCGUAGCCC
.(((...((((((((.((.((((((((((((((((((.....)))))......)))).))))))))).))(.((((....)))).)......))))))))..))) ( -49.60)
>DroGri_CAF1 43389 102 - 1
GGGGAGGGUGGCAAUAUGUGCAGCUCCUGCUUAAUGCUUGUUGCGUCCAGCGAGGGGCACGGACUGCUCAGGCAAUCGUAGCUGCCGUUAUAUUUGCCG-UAC--
(((.((..(((((.....))).(((((((((..((((.....))))..))).)))))).))..)).))).(((((..(((((....)))))..))))).-...-- ( -39.40)
>DroYak_CAF1 34754 102 - 1
GGCGAGGGUGGCAGGAUGUGCAGCUCCUGCUUGAUGCUAACCGCCUCCAGGGAGGGCGAUGGACUGUUCAGGCUGUCGUAGCUACCGCCAAAUCGGCCA-AGU--
(((((.((((((((((.(.....))))))).....(((.....((((....))))(((((((.((....)).))))))))))...))))...)).))).-...-- ( -39.30)
>DroPer_CAF1 31319 105 - 1
GGGGAGGGCGGCAGGAUGUGCAGCUCCUGCUUGAUGCUCGAGGCAUCCAACGAGGGCGAGGGGCUGCUCAGACAGUCGUAGCUGCCGUGGAACUUGCCGUAGCCC
.(((...((((((((.((.((((((((((((((((((.....)))))......)))).))))))))).))(.((((....)))).)......))))))))..))) ( -49.60)
>consensus
GGGGAGGGUGGCAGGAUGUGCAGCUCCUGCUUGAUGCUAGAGGCAUCCAGCGAGGGCGACGGACUGCUCAGACAGUCGUAGCUGCCGUCAAACUUGCCG_AGC__
........((((((((((.((((((((((((.(((((.....))))).))).)))......((((((....))))))..)))))))))....)))))))...... (-28.46 = -30.18 +   1.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:17 2006