| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,563,759 – 23,563,860 |
| Length | 101 |
| Max. P | 0.922404 |
| Location | 23,563,759 – 23,563,860 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 78.91 |
| Mean single sequence MFE | -31.48 |
| Consensus MFE | -13.72 |
| Energy contribution | -14.08 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.89 |
| Structure conservation index | 0.44 |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.922404 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23563759 101 - 27905053 --UGUCUCGACGCGGCUUAGUGUGGCUG-AGCUGCGAAAGCGG-----------CUUGCAUUUAUAAUUGUUGC-CAGUAGUAUUUAUUUUAUUAUGUCUAUAAAUAUAAUGAGAG --..(((((.((((((((((.....)))-))))))).....((-----------(..(((........))).))-)....((((((((............))))))))..))))). ( -31.20) >DroVir_CAF1 36413 110 - 1 --UAUUUCGACUUCUUUUGGUUUUCGCU-CGCUGCGAAAGCGG---CAAAUGCGCUUGCAUUUUUAAUUGUUGCGCCGCAGUAUUUAUUUUAUUAUGUCCAUAAAUAUAAUGAGGC --......((((......))))...((.-.(((((....))))---)....((((..(((........))).)))).))........(((((((((((......))))))))))). ( -28.50) >DroGri_CAF1 34350 113 - 1 AGUUUUUCUUUUUUUGCUGAUGCUACUGCUGCUGCGAAAGCGG---UAAAUGCGCUUGCAUUUUUAAUUGUUGGCCAGUAGUAUUUAUUUUAUUAUGUCCAUAAAUAUAAUGAGGC ...............(((((((((((((.((((((....))))---)).....(((.(((........))).)))))))))))))....(((((((((......)))))))))))) ( -32.80) >DroEre_CAF1 28210 101 - 1 --CGUCUCGACGCGGCUUAGUGUGGCUG-AGCUGCGAAAGCGG-----------CUUGCAUUUAUAAUUGUUGG-CAGCAGUAUUUAUUUUAUUAUGUCCAUAAAUAUAAUGAGAG --........((((((((((.....)))-)))))))...((.(-----------((.(((........))).))-).))........(((((((((((......))))))))))). ( -32.60) >DroYak_CAF1 28434 101 - 1 --UGUCUCGACGCGUCUUAGUGUGGCUG-AGCUGCGAAAGCGG-----------CUUGCAUUUAUAAUUGUUGG-CAGUAGUAUUUAUUUUAUUAUGUCCAUAAAUAUAAUGAGAG --..(((((((((......)))).((.(-((((((....))))-----------)))))..(((((.((((.((-((.(((((.......))))))))).)))).)))))))))). ( -32.50) >DroAna_CAF1 26589 112 - 1 --UGCCAAGACUCGGCUUAGUGGUGCUC-AGCUGCGAAAGCGGCAGCAAAUGCGCUUGCAUUUAUAAUUGUUGG-UAGUAGUAUUUAUUUUAUUAUGUCCAUAACUAUAAUGAGAC --........((((((..((((.((((.-.(((((....)))))))))....)))).))..(((((.((((.((-..((((((.......))))))..)))))).))))))))).. ( -31.30) >consensus __UGUCUCGACGCGGCUUAGUGUGGCUG_AGCUGCGAAAGCGG___________CUUGCAUUUAUAAUUGUUGG_CAGUAGUAUUUAUUUUAUUAUGUCCAUAAAUAUAAUGAGAC ..................((((..((((...((((....))))..............(((........)))....))))..))))..(((((((((((......))))))))))). (-13.72 = -14.08 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:16 2006