Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 23,560,951 – 23,561,053 |
Length | 102 |
Max. P | 0.521705 |
Location | 23,560,951 – 23,561,053 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 90.52 |
Mean single sequence MFE | -31.45 |
Consensus MFE | -23.44 |
Energy contribution | -25.12 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.07 |
Mean z-score | -1.56 |
Structure conservation index | 0.75 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521705 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23560951 102 + 27905053 AAUAUAUAAAAACAUUUUCCGUGUAAGGAGCGGGAGUUUUCCAGAAGCCAAAGGCUGGUCGUUGUCCCCAGCUAAACGCGGAGGGGCCGGCAUUUGGCAUAA ........(((((...((((((.......)))))))))))......((((((.(((((((.....((((.((.....)))).))))))))).)))))).... ( -32.50) >DroSec_CAF1 22375 101 + 1 AAUAUAUGAAAACAUUUUCCGUGUAAGACGAGGGAGUU-UCCAGAAGCCAAAGGCUGGUCGUUGUUCCCAGCUAAACGUGGAGGAGCAGGCAUUUGGCAUAA ......((.((((.(((..(((.....)))..))))))-).))...((((((.(((....(((.(((((........).)))).))).))).)))))).... ( -25.60) >DroSim_CAF1 24031 102 + 1 AAUAUAUGAAAACAUUUUCCGUGUAAGAAGAGGGAGUUUUCCAGAAGCCAAAGGCUGGUCGUUGUCCCCAGCUAAACGCAGAGGGGCCGGCAUUUGGCAUAA .......((((((...((((...........)))))))))).....((((((.(((((.......((((.((.....))...))))))))).)))))).... ( -29.51) >DroEre_CAF1 25414 102 + 1 CAGAUAUGAAAACAUUUUCCGUGUAAGGAGAGCGAGUUUUGCCGGAGCCAAAGGCUGGACGUUGUCCGCAGCUAAACGCGGAGGGGCCGGCGUUUGGCAUAA .................((((.((((((........))))))))))((((((.(((((.(.((.(((((........))))).)))))))).)))))).... ( -38.20) >consensus AAUAUAUGAAAACAUUUUCCGUGUAAGAAGAGGGAGUUUUCCAGAAGCCAAAGGCUGGUCGUUGUCCCCAGCUAAACGCGGAGGGGCCGGCAUUUGGCAUAA .......((((((.((((((......))))))...)))))).....((((((.((((......(((((..((.....))...))))))))).)))))).... (-23.44 = -25.12 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:15 2006