Locus 8810

Sequence ID 3R_DroMel_CAF1
Location 23,560,630 – 23,560,720
Length 90
Max. P 0.545838
window14145

overview

Window 5

Location 23,560,630 – 23,560,720
Length 90
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 83.52
Mean single sequence MFE -36.36
Consensus MFE -26.69
Energy contribution -28.25
Covariance contribution 1.56
Combinations/Pair 1.23
Mean z-score -1.64
Structure conservation index 0.73
SVM decision value 0.02
SVM RNA-class probability 0.545838
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23560630 90 + 27905053
--GGCUCUCGGCGGUU-GCAGCUCACCAUUAAGCACGCCGUUCCUUUGAGCCGGCUGUCCAUCACGGAGCACCGCUGCCAGUGAUGGGUGACC
--(((((.((((((((-..............))).))))).......)))))((.(..((((((((((((...))).)).)))))))..).)) ( -35.84)
>DroPse_CAF1 21082 91 + 1
CGGCCCCUCGGCGGUUCGCAGCUGGUCAUUAAACGCAACGGUCUUUGCAUCCAGCUGUUCAUCAAGGUGUGUGGCCAUUUCCGAUGUG--AUC
.((((.(.((.((((..((((((((....((((.((....)).))))...))))))))..)))..).)).).))))............--... ( -25.80)
>DroSec_CAF1 21934 90 + 1
--GGCUCUCGGCGGUU-GCAGCUCACCAUUAAGCACGCCGUUCCUUUGAGCCGGCUGUCCAUCACGGAGCACCGCUGCCUCUGAUGGGUGACC
--(((((.((((((((-..............))).))))).......)))))((.(..((((((.((.(((....))))).))))))..).)) ( -33.34)
>DroSim_CAF1 23691 90 + 1
--GGCUCUCGGCGGUU-GCAGCUCACCAUUAAGCACGCCGUUCCUUUGAGCCGGCUGUCCAUCACGGAGCACCGCUGCCUGUGAUGGGUGUCC
--(((((.((((((((-..............))).))))).......)))))((.(..(((((((((.(((....))))))))))))..).)) ( -38.64)
>DroEre_CAF1 25156 89 + 1
--GGCUCUCGGCG-UU-GCAGCUCACCAUUAAGCACGCCGUUCCUUUGAGCCGUCUGUCCAUCACGGAGCAGCGGUGCCUGUGAUGGGCAUCC
--(((((.(((((-(.-((.............)))))))).......)))))...((((((((((((.(((....)))))))))))))))... ( -41.72)
>DroYak_CAF1 25141 90 + 1
--GGCUCUCGGCGGUU-GCAGCUCGCCAUUAAGCACGCCGUUCCUUUGAGCCGGCUGUCCAUCACGGAGCACCGCUGCCUGUGAUGGGCAACC
--(((((.((((((((-((.....)).....))).))))).......)))))((.((((((((((((.(((....))))))))))))))).)) ( -42.80)
>consensus
__GGCUCUCGGCGGUU_GCAGCUCACCAUUAAGCACGCCGUUCCUUUGAGCCGGCUGUCCAUCACGGAGCACCGCUGCCUGUGAUGGGUGACC
..(((((.((((((....).(((........))).))))).......)))))((.((((((((((((.(((....))))))))))))))).)) (-26.69 = -28.25 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:14 2006