| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,550,397 – 23,550,495 |
| Length | 98 |
| Max. P | 0.516271 |
| Location | 23,550,397 – 23,550,495 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 84.35 |
| Mean single sequence MFE | -23.46 |
| Consensus MFE | -18.40 |
| Energy contribution | -19.98 |
| Covariance contribution | 1.59 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.78 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.516271 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23550397 98 - 27905053 AAGGAGUGAAGUUUCCGCAAGCAGCUG--------UAGCGAAAUUAAAUAGAAAACUGGAAACUAAACGAGAUUAUCGCCAU---GCCACAGCGAUAUUCGUAUACUCU ..((((((.((((((((....).((..--------..))..................)))))))..(((((..((((((...---......))))))))))).)))))) ( -24.70) >DroSec_CAF1 17129 98 - 1 AAGGAGUGAAGUUUCCGCCAGCAGCUG--------UAGCGAAAUUAAAUAGAAAACUGGAAACUAAACGAGAUUAUCGCCAU---GCCACAGCGAUAUUCGUAUACUCU ..((((((.((((((((....).((..--------..))..................)))))))..(((((..((((((...---......))))))))))).)))))) ( -24.70) >DroSim_CAF1 18886 98 - 1 AAGGAGUGAAGUUUCCGCCAGCAGCUG--------UAGCGAAAUUAAAUAGAAAACUGGAAACUAAACGAGAUUAUCGCCAU---GCCACAGCGAUAUUCGUAUACUCU ..((((((.((((((((....).((..--------..))..................)))))))..(((((..((((((...---......))))))))))).)))))) ( -24.70) >DroEre_CAF1 17177 88 - 1 ----------GUUUCCGCCAGCAGCUG--------CAGCAAAAUUAAAUAGAAAACUGGAAACUAAACGAGAUUAUCGCCGU---GCCACAGCGAUAUUCGUAUACUCU ----------((((((((..((....)--------).))..........((....))))))))...(((((..((((((.(.---....).)))))))))))....... ( -19.70) >DroYak_CAF1 20079 98 - 1 AAGGAGUGAAGUUUCCGCCAGCAGCUG--------UAGCAAAAUUAAAUAGAAAACUGGAAACUAAACGAGAUUAUCGCCAU---GGCACAGCGAUACUCGUAUACUCU ..((((((.((((((((....).((..--------..))..................)))))))..(((((..((((((...---......))))))))))).)))))) ( -26.70) >DroAna_CAF1 18617 103 - 1 ----AGUGAAGUU-GUGCCAGCAGCUGCAAGUGUAUAGCAAAAUUAAAUAGAA-AGUGGAAACUGCACUGGAUUAUCCCCUUUUCGCCAGGACGAUGCCCGUAUACCCU ----..((.((((-((....)))))).)).((((((.(((.............-(((....)))(..((((...............))))..)..)))..))))))... ( -20.26) >consensus AAGGAGUGAAGUUUCCGCCAGCAGCUG________UAGCAAAAUUAAAUAGAAAACUGGAAACUAAACGAGAUUAUCGCCAU___GCCACAGCGAUAUUCGUAUACUCU ..((((((.((((((((....).((((........))))..................)))))))..(((((..((((((............))))))))))).)))))) (-18.40 = -19.98 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:13 2006