| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,540,443 – 23,540,533 |
| Length | 90 |
| Max. P | 0.779752 |
| Location | 23,540,443 – 23,540,533 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.62 |
| Mean single sequence MFE | -25.22 |
| Consensus MFE | -13.51 |
| Energy contribution | -13.90 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.779752 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23540443 90 + 27905053 ------------------------GCAACAGGAAGCGA-GCGCGU---AGUAGGAAAAGCAAUUUUACUGCGAGUUUCCU-CAAGACAAAUAAGUCUGCUGGAUCAAAAAGGACUUUC-A ------------------------......((((((.(-((.(((---(((((((.......)))))))))).)))(((.-..((((......))))...)))........).)))))-. ( -23.80) >DroVir_CAF1 11170 94 + 1 ----------------------CAACAACAGGAUGCGCCGCGCGA---AGUAGGAAAAGCAAUUUUACUGCGAGCUUCCUUUAAGACAAAUAAGUCAGCUGGAUCAAAAGGGGCUUUC-A ----------------------........(((.((.((..((..---.((((.((((....)))).))))..)).(((.....(((......)))....)))......)).)).)))-. ( -22.80) >DroGri_CAF1 10178 118 + 1 ACGGGAACGGGAAGGGGAAGGGGAAGAACAGGAAGUGA-GCGCGUAGUAGUAGGAAAAGCAAUUUUGCUGCGAGCUUCCUUUAAGACAAAUAAGUCAGCUGGAUCAAAAGGGACUUUC-A .((....))(((((........((....(((((((..(-((.((((((((..............)))))))).)))..))))..(((......)))..)))..))........)))))-. ( -30.43) >DroWil_CAF1 6608 91 + 1 ------------------------GCAGCAGGAAGCGA-ACGCGU---AGUAGGAAAAGCAAUUUUACUGCGAGUUUCCU-CAAGACAAAUAAGUCUGCUGGAUCAAAAAGGACUUUCCA ------------------------.(((((((((((..-...(((---(((((((.......)))))))))).)))))))-..((((......)))))))).........((.....)). ( -29.40) >DroMoj_CAF1 9359 86 + 1 ----------------------GAACAACAGGAUGCG-----------AGUAGGAAAAGCAAUUUCACUGCGAGCUUCCUUUAAGACAAAUAAGUCAGCCGGAUCAAAAGGACCUUUC-A ----------------------(((....((((.((.-----------.((((..(((....)))..))))..)).))))....(((......)))....((.((.....)))).)))-. ( -19.60) >DroAna_CAF1 8037 90 + 1 ------------------------ACAACAGGAAGUGA-GCGCGU---AGUAGGAAAAGCAAUUUUACUGCGAGUUUCCU-CAAGACAAAUAAGUCUGCUGGAUCAAAAAGGACUUUC-A ------------------------......((((((.(-((.(((---(((((((.......)))))))))).)))(((.-..((((......))))...))).........))))))-. ( -25.30) >consensus ________________________ACAACAGGAAGCGA_GCGCGU___AGUAGGAAAAGCAAUUUUACUGCGAGCUUCCU_CAAGACAAAUAAGUCAGCUGGAUCAAAAAGGACUUUC_A .............................(((((((....(((.....(((((((.......)))))))))).)))))))....(((......)))........................ (-13.51 = -13.90 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:10 2006