Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 23,535,139 – 23,535,239 |
Length | 100 |
Max. P | 0.889221 |
Location | 23,535,139 – 23,535,239 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 76.14 |
Mean single sequence MFE | -17.86 |
Consensus MFE | -3.76 |
Energy contribution | -4.56 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.85 |
Structure conservation index | 0.21 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.816065 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23535139 100 + 27905053 UGAAAUUCGCUUAAUUGUAAAU----ACUGCCACUGGCCACAAGCAUAAACGUAAACAUAAGCAUAAUUUCUCUUUAUGACUUCACAUUUCUUCCUGGAAGUCA .((((((.(((((..(((....----...(((...))).....((......))..))))))))..))))))......(((((((.((........))))))))) ( -17.60) >DroSec_CAF1 2200 100 + 1 UGAAAUUCGCUUGAUUGUAAAU----ACUGCCACUGGCCACAAGCAUAAACAUAAACAUAAACAUAAUUUCUCCUUAUGACUUCACAUUUCUUCCUGGAAGUCA ........(((((...((....----)).(((...)))..)))))................................(((((((.((........))))))))) ( -15.80) >DroSim_CAF1 2923 100 + 1 UGAAAUUCGCUUAAUUGUAAAU----ACUGCCACUAGCCACAAGCAUAAACAUAAACAUAAACAUAAUUUCUCCUUAUGACUUCACAUUUCUUCCUGGAAGUCA .((((((.((......))....----..........((.....))....................))))))......(((((((.((........))))))))) ( -11.10) >DroEre_CAF1 2211 94 + 1 UGGAAUUUGCUUUAUUGUGAAU----ACUACCUCCGGGCAAAAGCAAAAGCA------UAAACAUAAGUUCUGUUUAUGACAUAACCUUUGAAUGCGGCAGUCA (((.(((..(......)..)))----.))).(((((.(..((((......((------((((((.......)))))))).......))))...).))).))... ( -16.92) >DroYak_CAF1 2973 92 + 1 UGACUCUUAUUUAAUUGUAAAUUAAUUGUGCCCCUGGGCAC------AAGCA------UAAACAUAAAUUCUGUUUAUGACAUCACAUUUGAACCGGGAAGUCA .(((((((.(((((.(((.......(((((((....)))))------))(((------((((((.......)))))))).)...))).)))))..))).)))). ( -27.90) >consensus UGAAAUUCGCUUAAUUGUAAAU____ACUGCCACUGGCCACAAGCAUAAACAUAAACAUAAACAUAAUUUCUCUUUAUGACUUCACAUUUCUUCCUGGAAGUCA .............................................................................(((((((.............))))))) ( -3.76 = -4.56 + 0.80)
Location | 23,535,139 – 23,535,239 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 76.14 |
Mean single sequence MFE | -23.84 |
Consensus MFE | -9.59 |
Energy contribution | -11.43 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.26 |
Mean z-score | -2.10 |
Structure conservation index | 0.40 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.889221 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23535139 100 - 27905053 UGACUUCCAGGAAGAAAUGUGAAGUCAUAAAGAGAAAUUAUGCUUAUGUUUACGUUUAUGCUUGUGGCCAGUGGCAGU----AUUUACAAUUAAGCGAAUUUCA (((((((((........)).)))))))......((((((.((((((.(....)((..(((((.((.(....).)))))----))..))...)))))))))))). ( -24.60) >DroSec_CAF1 2200 100 - 1 UGACUUCCAGGAAGAAAUGUGAAGUCAUAAGGAGAAAUUAUGUUUAUGUUUAUGUUUAUGCUUGUGGCCAGUGGCAGU----AUUUACAAUCAAGCGAAUUUCA (((((((((........)).)))))))......((((((.((((..((....(((..(((((.((.(....).)))))----))..)))..)))))))))))). ( -21.70) >DroSim_CAF1 2923 100 - 1 UGACUUCCAGGAAGAAAUGUGAAGUCAUAAGGAGAAAUUAUGUUUAUGUUUAUGUUUAUGCUUGUGGCUAGUGGCAGU----AUUUACAAUUAAGCGAAUUUCA (((((((((........)).)))))))......((((((.((((((......(((..(((((.((.(....).)))))----))..)))..)))))))))))). ( -23.60) >DroEre_CAF1 2211 94 - 1 UGACUGCCGCAUUCAAAGGUUAUGUCAUAAACAGAACUUAUGUUUA------UGCUUUUGCUUUUGCCCGGAGGUAGU----AUUCACAAUAAAGCAAAUUCCA ..((((((.(...(((((((...(.((((((((.......))))))------)))....)))))))....).))))))----...................... ( -22.70) >DroYak_CAF1 2973 92 - 1 UGACUUCCCGGUUCAAAUGUGAUGUCAUAAACAGAAUUUAUGUUUA------UGCUU------GUGCCCAGGGGCACAAUUAAUUUACAAUUAAAUAAGAGUCA .(((((....(((.((.(((((.(.((((((((.......))))))------)))((------(((((....))))))).....))))).)).)))..))))). ( -26.60) >consensus UGACUUCCAGGAAGAAAUGUGAAGUCAUAAAGAGAAAUUAUGUUUAUGUUUAUGUUUAUGCUUGUGGCCAGUGGCAGU____AUUUACAAUUAAGCGAAUUUCA (((((((((........)).)))))))......((((((.((((((.............(((.((.(....).))))).............)))))))))))). ( -9.59 = -11.43 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:09 2006