Locus 8803

Sequence ID 3R_DroMel_CAF1
Location 23,528,320 – 23,528,418
Length 98
Max. P 0.952613
window14135

overview

Window 5

Location 23,528,320 – 23,528,418
Length 98
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 73.96
Mean single sequence MFE -27.05
Consensus MFE -16.59
Energy contribution -16.65
Covariance contribution 0.06
Combinations/Pair 1.45
Mean z-score -1.86
Structure conservation index 0.61
SVM decision value 1.42
SVM RNA-class probability 0.952613
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23528320 98 + 27905053
----------AUCAGAACUACAACACGGUCGGUGGCACAACCUACUUUGUACCGCCGGCUCAAACCACUAGCCGACCAAGUGCUCUGCCCCAGCGUCGUCCCACCAAC
----------......((.((.....(((((((((.((((......)))).)))))((((.........))))))))....(((.......))))).))......... ( -25.10)
>DroVir_CAF1 9934 108 + 1
AUAAACUAUCACCAAAAUUAUAAUACUGUUGGCGGCACUACAUAUUUUGUGCCGCCAGUACAGGCCACUACCCGCCCCGCUGUGCUGCCCCAGCGUCGACCCACCAAU
.........................(((((((((((((..........)))))))))..)))).........((...(((((........))))).)).......... ( -28.60)
>DroGri_CAF1 8126 108 + 1
CUUAACUAUCACCAAAAUUACAAUACAGUUGGUGGCACCACGUACUUUGUGCCGCCGGCACAGGCAACCACGCGGCCAGCCGUGCUGCCCCAGCGUCGACCCACAAAU
...........................(((((.((((.(((......((((((...))))))(((..((....))...)))))).))))))))).............. ( -32.70)
>DroSec_CAF1 7300 98 + 1
----------AUCAGAACUAUAACACGGUCGGUGGCACAACCUACUUUGUGCCGCCGGCUCAAACCACUAGCCGACCAAGUGCUCUGCCCCAGCGUCGUCCCACCAAU
----------................((((((((((((((......))))))))))((((.........))))))))..(((((.......)))).)........... ( -31.40)
>DroWil_CAF1 7163 108 + 1
AUGAACUAUCAUCAGAACUACAAUACAGUGGGGGGUACCACGUAUUUUGUGCCGCCAGCCCAGACAACCAGUCGACCUACUCAGCUGCCUCAACGACGCCCAACCAAU
.........................(((((((.(((..((((.....))))..)))..))).(((.....)))..........))))..................... ( -18.50)
>DroAna_CAF1 7157 98 + 1
----------AUCAGAACUACAACACAGUCGGGGGCACCACUUACUUUGUGCCGCCGGCGCAGCCAACUAACCGGCCUACUUCACUGCCCCAACGUCGACCAACCAAU
----------.................((((((((((..........((((((...))))))(((........))).........)))))).....))))........ ( -26.00)
>consensus
__________AUCAGAACUACAACACAGUCGGUGGCACCACCUACUUUGUGCCGCCGGCACAGACAACUAGCCGACCAACUGCGCUGCCCCAGCGUCGACCCACCAAU
...........................(((((((((((..........)))))))))))................................................. (-16.59 = -16.65 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:04 2006