| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,527,977 – 23,528,082 |
| Length | 105 |
| Max. P | 0.965942 |
| Location | 23,527,977 – 23,528,082 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 73.34 |
| Mean single sequence MFE | -37.23 |
| Consensus MFE | -18.35 |
| Energy contribution | -19.43 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.49 |
| SVM decision value | 1.59 |
| SVM RNA-class probability | 0.965942 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23527977 105 + 27905053 GUUCUGAUGCAGAUCGCCUAUCAGCAACAGGAGCUGCAGGCCCAACUGCAGACCAUGCAACUUGGACCACCUACUGCCGC-AGGAGCAGUUCCA---ACACCA---CCAAAG ((((((((((.....))..))))).))).((((((((.((.((((.((((.....))))..)))).)).(((........-))).)))))))).---......---...... ( -34.90) >DroVir_CAF1 9535 105 + 1 AUGCUCAUGCAAAUUGCCUACCAGCAGCAGGAGCUGCAGGCACAGCUGCAAACGCUGCAGUUGGGUCCAGC-A---CCGCCGACAGCGGUGCCA---GCGCCACAGUCCAAA .(((....)))...(((((....(((((....))))))))))((((((((.....))))))))(((.(.((-(---((((.....)))))))..---).))).......... ( -44.50) >DroGri_CAF1 7721 111 + 1 AUGCUCAUGCAAAUUGCGUAUCAGCAACAAGAGUUGCAGGCGCAACUGCAAAACCUACAACUGGGUGCAGC-AGUGCCGCCGACAGCGGUGCCAUCGGUGCCACAACCCAAA .((((.((((.......)))).))))......((((..((((..(((((...(((((....)))))...))-)))..))))..))))((..((...))..)).......... ( -40.70) >DroEre_CAF1 6987 105 + 1 GUUCUCAUGCAGAUCGCCUACCAGCAACAGGAACUGCAAGCCCAACUGCAGACCAUGCAACUGGGUCCACCCACUGCCGC-AGGAGCAGUGCCA---ACACCA---CCAAAG .......(((((....(((.........)))..))))).(((((..((((.....))))..))))).....(((((((..-..).))))))...---......---...... ( -27.50) >DroMoj_CAF1 7205 105 + 1 AUGCUCAUGCAGAUCGCCUACCAGCAGCAGGAGCUGCAGGCGCAGCUGCAGACACUGCAAUUGGGCCCAGC-A---CCGCCAGCAGCGGUGGCC---GCGCCUCAGUCCAAG .(((...(((((..(((((....(((((....))))))))))...)))))......)))(((((((.(.((-(---((((.....))))).)).---).))).))))..... ( -43.50) >DroAna_CAF1 6811 102 + 1 GUCCUUAUGCAGAUAGCUUACCAGCAGCAAGAGCUCCAAGCUCAGCUGCAGACGAUGCAAUUGGGACCCAACAC---GGC-GGCGACGGUGCCA---GCACCA---CCCAAA (((((..((((.....((.....(((((..((((.....)))).)))))))....))))...))))).......---((.-(....)((((...---.)))).---.))... ( -32.30) >consensus AUGCUCAUGCAGAUCGCCUACCAGCAACAGGAGCUGCAGGCCCAACUGCAGACCAUGCAACUGGGUCCAGC_AC__CCGC_AGCAGCGGUGCCA___GCACCA___CCCAAA .......(((((..(((((....(((((....))))))))))...)))))...........((((.............((.....))((((.......))))....)))).. (-18.35 = -19.43 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:03 2006