Locus 8801

Sequence ID 3R_DroMel_CAF1
Location 23,526,859 – 23,526,957
Length 98
Max. P 0.698869
window14133

overview

Window 3

Location 23,526,859 – 23,526,957
Length 98
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 83.14
Mean single sequence MFE -43.97
Consensus MFE -31.33
Energy contribution -30.73
Covariance contribution -0.61
Combinations/Pair 1.30
Mean z-score -2.09
Structure conservation index 0.71
SVM decision value 0.35
SVM RNA-class probability 0.698869
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23526859 98 + 27905053
ACGGUGCUGGCCAGGC------GGCGGCGGAGCCAAAUGGCGA------ACUCAAUGGACUUGCGGCCGCCGGUGCCACGCCGACUGGCCAAACGCCACAGAUCUCACAG
..((((.(((((((.(------((((..((.(((....((((.------.(.(((.....))).)..))))))).)).))))).)))))))..))))............. ( -44.90)
>DroSec_CAF1 5842 98 + 1
ACGGUGCUGGCCAGGC------GGCGGCGGAGCCAAAUGGCGA------ACUAAAUGGACUUGCGGCAGCCGGUGCCACGCCGACUGGCCAAACGCCACAGAUCUCACAG
..((((.(((((((.(------((((((((..(((..(((...------.)))..)))..))))((((.....)))).))))).)))))))..))))............. ( -43.70)
>DroSim_CAF1 6487 98 + 1
ACGGUGCUGGCCAGGC------GGCGGCGGAGCCAAAUGGCGA------ACUCAAUGGACUUGCGGCAGCCGGUGCCACGCCGACUGGCCAAACGCCACAGAUCUCACAG
..((((.(((((((.(------((((.....(((....)))..------......((((((.((....)).))).)))))))).)))))))..))))............. ( -43.00)
>DroEre_CAF1 5857 98 + 1
ACGGUGCUGGCCAGGC------GGCGGCGGAGCCAAAUGGCGA------ACUCAAUGGACUAGCGGCAGCCGGCGCCACGCCCACUGGCCAAACGCCACAGAUCUCACAG
..((((.(((((((..------((((..((.(((...((.((.------..((....))....)).))...))).)).))))..)))))))..))))............. ( -41.20)
>DroYak_CAF1 5885 98 + 1
ACGGUGCUGGCCAGGC------GGCGGCGGAGCCAAAUGGCGA------ACUCAAUGGACUAGCGGCAGCCGGCGCCACGCCCACUGGCCAAACGCCACAGAUCUCACAG
..((((.(((((((..------((((..((.(((...((.((.------..((....))....)).))...))).)).))))..)))))))..))))............. ( -41.20)
>DroMoj_CAF1 5859 110 + 1
GCGAUGGUGGCCAAUGUCCACCGGGUGUGGAGCCCACUGGCGAUGAUGUGUCCAAUGGCAACACUGCCACAGGAUCUACGCCGGCUGGACAGACGCCAACCAUAUCACAA
...((((((((...((((((((((.(((((((((....))).........(((..(((((....)))))..))))))))))))).))))))...))).)))))....... ( -49.80)
>consensus
ACGGUGCUGGCCAGGC______GGCGGCGGAGCCAAAUGGCGA______ACUCAAUGGACUUGCGGCAGCCGGUGCCACGCCGACUGGCCAAACGCCACAGAUCUCACAG
..((((.(((((((........((((.(((.(((....))).........((....))...........))).)))).......)))))))..))))............. (-31.33 = -30.73 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:03 2006