Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 23,525,023 – 23,525,122 |
Length | 99 |
Max. P | 0.500000 |
Location | 23,525,023 – 23,525,122 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 83.15 |
Mean single sequence MFE | -19.04 |
Consensus MFE | -14.50 |
Energy contribution | -14.70 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.18 |
Mean z-score | -1.38 |
Structure conservation index | 0.76 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23525023 99 - 27905053 CACCACUAACCCAACGGCAUCCACCAUCC-ACAGCUCACACCUCCUUGCUUUACGAGAAGGUCUGUGUGCUCUUCAACAUUGCCGCCCUGCAGAGCAACA ..............(((((..........-..(((.(((((((.((((.....)))).))))..))).))).........)))))...(((...)))... ( -20.40) >DroSec_CAF1 4021 99 - 1 CACCACUAACACCACGGCGUCCCCCAUCC-ACAGCUCACACCUCCUUGCUCUACGAGAAGGUCUGCGUGCUAUUCAACAUUGCCGCCCUGCAGAGCAACA ...............((......))....-...((((..((((.((((.....)))).))))..(((.((...........)))))......)))).... ( -19.30) >DroSim_CAF1 3772 99 - 1 CACCACUAACACCACGGCGUCCCCCAUCC-ACAGCUCACACCUCCUUGCUCUACGAGAAGGUCUGCGUGCUCUUCAACAUUGCCGCCCUGCAGAGCAACA ...............((......))....-...((((..((((.((((.....)))).))))..(((.((...........)))))......)))).... ( -19.30) >DroEre_CAF1 4053 97 - 1 CACCACUGACCCCAA--CAUCCACAAUCC-ACAGCUCACACCUCCUUGCUCUACGAGAAGGUAUGCGUGCUCUUCAACAUUGCUGCCCUGCAGAGCAACA ...............--............-...((((..((((.((((.....)))).)))).((((.((..............))..)))))))).... ( -17.44) >DroYak_CAF1 4050 97 - 1 CACCACUAACCUGAC--UACCCAUCAUUC-ACAGCUCACACCUCCUUGCUCUAUGAGAAGGUAUGCGUGCUCUUCAACAUUGCCGCUCUCCAGAGCUGUA ...............--............-(((((((..((((.(((.......))).))))..(((.((...........)))))......))))))). ( -22.60) >DroAna_CAF1 3748 97 - 1 CACCAUUAACCGCUC---UUAAACUUUCCAAUAGCUCACACAUCCCUCCUGUAUGAGAAGGUCUGCGUGCUCUUUAAUAUUGCUGCCUUGCAAAGCAGUA ........((.(((.---..............((..(((.((..(((.((.....)).)))..)).)))..))......((((......))))))).)). ( -15.20) >consensus CACCACUAACCCCAC__CAUCCACCAUCC_ACAGCUCACACCUCCUUGCUCUACGAGAAGGUCUGCGUGCUCUUCAACAUUGCCGCCCUGCAGAGCAACA .................................((((..((((.((((.....)))).))))..(((.((...........)))))......)))).... (-14.50 = -14.70 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:02 2006