Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,975,626 – 2,975,743 |
Length | 117 |
Max. P | 0.815674 |
Location | 2,975,626 – 2,975,743 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.14 |
Mean single sequence MFE | -23.40 |
Consensus MFE | -12.72 |
Energy contribution | -13.56 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.30 |
Mean z-score | -1.83 |
Structure conservation index | 0.54 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.815674 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2975626 117 + 27905053 UUUAACGGCCUAGCCGGUGGAUUUGCAAAUAGGAAAAUAAAUAUAAAAAA-CAAAUUGGCGGGAAACCAU--CUCAUUACUAAGGUGAGCAAAUUAACCUUUUUUUUACAUUAUCAAAUG ......(((...)))(((.(((((((........................-.........((....))..--.(((((.....)))))))))))).)))..................... ( -22.10) >DroSec_CAF1 22195 108 + 1 UCUAACGGUCUGGCCGUUGGAUUUGCAAAUUGGAAAAUAAAAACAAAAAACCAAAUUGGCGGGAAACCAUUUCUCAUUACUAAAGUGAGCAAAUUCACAUU---UUAAAAG--------- ((((((((.....))))))))(((((....((..((((............((.....)).((....))))))..))((((....)))))))))........---.......--------- ( -25.00) >DroSim_CAF1 20116 108 + 1 UCUAACGGUCUAGCCGUUGGUCUUGCAAAUAGGAAAAUAAAAACAAAAAACCAAAUUGGCGGGAAACCAUUUCUCAUUACUAAAGUGAGCAAAUUAAUAUU---UUCACGU--------- .(((((((.....)))))))............(((((((...........((.....)).((....))((((((((((.....)))))).))))...))))---)))....--------- ( -24.40) >DroEre_CAF1 21063 114 + 1 GUUAACAGUCUUGCCGUUGGUUUUGAUAAUAAAAAAAUAAACAUAAAAUA-CAAAUUGGCGGGAAACAAUUCCCCAUUACUAAAGUGAGCAGAUUAAGGGU-----AAAGCUAUCAAAUG ......((..((((((((.(((((.........))))).)))........-..((((.(((((((....)))))..((((....)))))).))))...)))-----))..))........ ( -21.40) >DroYak_CAF1 18332 114 + 1 UUUAACGGUAUUGCUGUUUGGUUUGCAAAUAGGAAAACAACAAUAAUGAC-CAAAUUGGCGGGAAAGAACUUUCCAUUACUAAAGUGAGCAAAUUGAUAGU-----UCGGCUAUCAAAUU ......(((.((.(((((((.....))))))).)).....((....))))-)......((.(((((....))))).((((....))))))...(((((((.-----....)))))))... ( -24.10) >consensus UUUAACGGUCUAGCCGUUGGAUUUGCAAAUAGGAAAAUAAAAAUAAAAAA_CAAAUUGGCGGGAAACCAUUUCUCAUUACUAAAGUGAGCAAAUUAACAUU___UUAAAGCUAUCAAAU_ .((((((((...))))))))((((((..................................(((((.....))))).((((....)))))))))).......................... (-12.72 = -13.56 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:28 2006