Locus 88

Sequence ID 3R_DroMel_CAF1
Location 534,595 – 534,715
Length 120
Max. P 0.732974
window149

overview

Window 9

Location 534,595 – 534,715
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.50
Mean single sequence MFE -47.97
Consensus MFE -34.39
Energy contribution -33.87
Covariance contribution -0.52
Combinations/Pair 1.41
Mean z-score -1.70
Structure conservation index 0.72
SVM decision value 0.43
SVM RNA-class probability 0.732974
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 534595 120 - 27905053
UAUCCUCGAUGGACUGCAUCUUGGCAUUGGCCGUUGCUGUGGCUUCGCUCAAUGAUUGCGUGGCCGCCGCUGCGGCCGUUGCUGAUUCGGUCCAGGACUCGGCGGAGUUUCCUUUUACCG
..((((((((((((((.(((..((((.(((((((.((.((((((.(((.........))).)))))).)).))))))).))))))).)))))))....)))).))).............. ( -56.00)
>DroVir_CAF1 13174 120 - 1
UCUCCUCAAUGGACAGCAUUUUUGCAUUGGCCGUGGCGGUUGCCUCGCUUAGCGAUUGGGUGGCGGCCGCUGCCGCCGUUGCAGAUUCCGUCCAUGAUUCCGCCGAGUUGCCCUUCACUG
........((((((.(....((((((.((((.(..(((((((((((((...))))......)))))))))..).)))).))))))..).))))))(((((....)))))........... ( -47.30)
>DroGri_CAF1 15134 120 - 1
UCUCCUCAAUGGACAGCAUCUUCGCAUUGGCCGUGGCAGUUGCCUCGCUCAGCGAUUGAGUUGCGGCCGCUGCCGCUGUUGCCGAUUCCGUCCACGACUCCGCUGAGUUGCCCUUUACCG
.........(((((.((......))((((((.((((((((.(((.(((((((...))))).)).))).))))))))....))))))...)))))((((((....)))))).......... ( -45.70)
>DroWil_CAF1 62707 120 - 1
UCUCCUCAAUGGACUGCAUCUUGGCAUUUGCUGUGGCUGUGGCUUCGCUUAGCGAUUGGGUGGCCGCUGCCGCUGCAGUGGCGGAUUCUGUCCACGAUUCGGCUGAAUUUCCUUUGGCUG
.........(((((.(.((((.(.((((.((.(((((.((((((((((...))))......)))))).))))).)))))).))))).).))))).....((((..((.....))..)))) ( -45.60)
>DroMoj_CAF1 14434 120 - 1
UCUCUUCAAUAGACAACAUCUUUGCAUUGGCAGUUGCGGUUGCCUCACUCAGCGAUUGUGUUGCGGCCGCUGCCGCCGUAGCCGAUUCCGUCCACGACUCAGCUGAGGUGCCUUUGACCG
.....((((.((....((((((.((...(((.((.((((((((..(((.........)))..)))))))).)).)))((.(.((....)).).))......)).)))))).))))))... ( -36.50)
>DroAna_CAF1 12136 120 - 1
UCUCCUCGAUGGACAGCAUCUUGGCGUUCGCCGUGGCGGUGGCUUCGCUCAGGGACUGAGUGGCCGCCGCAGCCGCCGUCGCCGAUUCCGUCCAGGACUCGGCCGAGUUGCCCUUAACCG
....((((((((.(.((.....(((....)))...((((((((..(((((((...))))))))))))))).)).))))))(((((.(((.....))).))))).)))............. ( -56.70)
>consensus
UCUCCUCAAUGGACAGCAUCUUGGCAUUGGCCGUGGCGGUGGCCUCGCUCAGCGAUUGAGUGGCCGCCGCUGCCGCCGUUGCCGAUUCCGUCCACGACUCGGCUGAGUUGCCCUUGACCG
.........(((((.(.(((...(((.((((.(..((.((((((..((((((...)))))))))))).))..).)))).))).))).).)))))((((((....)))))).......... (-34.39 = -33.87 +  -0.52) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:44 2006