Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 534,595 – 534,715 |
Length | 120 |
Max. P | 0.732974 |
Location | 534,595 – 534,715 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.50 |
Mean single sequence MFE | -47.97 |
Consensus MFE | -34.39 |
Energy contribution | -33.87 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.41 |
Mean z-score | -1.70 |
Structure conservation index | 0.72 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.732974 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 534595 120 - 27905053 UAUCCUCGAUGGACUGCAUCUUGGCAUUGGCCGUUGCUGUGGCUUCGCUCAAUGAUUGCGUGGCCGCCGCUGCGGCCGUUGCUGAUUCGGUCCAGGACUCGGCGGAGUUUCCUUUUACCG ..((((((((((((((.(((..((((.(((((((.((.((((((.(((.........))).)))))).)).))))))).))))))).)))))))....)))).))).............. ( -56.00) >DroVir_CAF1 13174 120 - 1 UCUCCUCAAUGGACAGCAUUUUUGCAUUGGCCGUGGCGGUUGCCUCGCUUAGCGAUUGGGUGGCGGCCGCUGCCGCCGUUGCAGAUUCCGUCCAUGAUUCCGCCGAGUUGCCCUUCACUG ........((((((.(....((((((.((((.(..(((((((((((((...))))......)))))))))..).)))).))))))..).))))))(((((....)))))........... ( -47.30) >DroGri_CAF1 15134 120 - 1 UCUCCUCAAUGGACAGCAUCUUCGCAUUGGCCGUGGCAGUUGCCUCGCUCAGCGAUUGAGUUGCGGCCGCUGCCGCUGUUGCCGAUUCCGUCCACGACUCCGCUGAGUUGCCCUUUACCG .........(((((.((......))((((((.((((((((.(((.(((((((...))))).)).))).))))))))....))))))...)))))((((((....)))))).......... ( -45.70) >DroWil_CAF1 62707 120 - 1 UCUCCUCAAUGGACUGCAUCUUGGCAUUUGCUGUGGCUGUGGCUUCGCUUAGCGAUUGGGUGGCCGCUGCCGCUGCAGUGGCGGAUUCUGUCCACGAUUCGGCUGAAUUUCCUUUGGCUG .........(((((.(.((((.(.((((.((.(((((.((((((((((...))))......)))))).))))).)))))).))))).).))))).....((((..((.....))..)))) ( -45.60) >DroMoj_CAF1 14434 120 - 1 UCUCUUCAAUAGACAACAUCUUUGCAUUGGCAGUUGCGGUUGCCUCACUCAGCGAUUGUGUUGCGGCCGCUGCCGCCGUAGCCGAUUCCGUCCACGACUCAGCUGAGGUGCCUUUGACCG .....((((.((....((((((.((...(((.((.((((((((..(((.........)))..)))))))).)).)))((.(.((....)).).))......)).)))))).))))))... ( -36.50) >DroAna_CAF1 12136 120 - 1 UCUCCUCGAUGGACAGCAUCUUGGCGUUCGCCGUGGCGGUGGCUUCGCUCAGGGACUGAGUGGCCGCCGCAGCCGCCGUCGCCGAUUCCGUCCAGGACUCGGCCGAGUUGCCCUUAACCG ....((((((((.(.((.....(((....)))...((((((((..(((((((...))))))))))))))).)).))))))(((((.(((.....))).))))).)))............. ( -56.70) >consensus UCUCCUCAAUGGACAGCAUCUUGGCAUUGGCCGUGGCGGUGGCCUCGCUCAGCGAUUGAGUGGCCGCCGCUGCCGCCGUUGCCGAUUCCGUCCACGACUCGGCUGAGUUGCCCUUGACCG .........(((((.(.(((...(((.((((.(..((.((((((..((((((...)))))))))))).))..).)))).))).))).).)))))((((((....)))))).......... (-34.39 = -33.87 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:44 2006