| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,522,407 – 23,522,501 |
| Length | 94 |
| Max. P | 0.652664 |
| Location | 23,522,407 – 23,522,501 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 71.67 |
| Mean single sequence MFE | -25.92 |
| Consensus MFE | -9.55 |
| Energy contribution | -10.22 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.37 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.652664 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23522407 94 - 27905053 AUACCCAGGCAGUUAUGC---CAACCAGCAGGGUGGAUAUCCCAACCA---GAAGCCACCUGGCUGGUAAAUG---GCGCU-GUAGCUGUAAUCAAGUUCAUGU ........((((((((((---((((((((.((((((...((.......---))..)))))).))))))...))---))...-)))))))).............. ( -34.60) >DroPse_CAF1 1473 91 - 1 CUAUCCUGGCAGUUAUGCUCCCCAACAGCAAGGCGGCUAUCCCAACCA---GAAGCCACCAGGAUGGUAAACC---GCAUC-CCACCCGUA------UUUAUAC (((((((((..((..((((.......))))..))((((.((.......---)))))).)))))))))......---.....-.........------....... ( -24.90) >DroEre_CAF1 1420 92 - 1 AUACCCAGGCAGUUAUGC---CAACCAGCAGGGCGGAUAUCCAAACCA---GAAGCCACCUGGCUGGUAAAUG---GCGCU-GUAGCU--AAGCAAUUUCAUGU ....(((((((....)))---).((((((.(((.((...((.......---))..)).))).))))))...))---).(((-......--.))).......... ( -28.50) >DroWil_CAF1 1469 87 - 1 CUAUCCCGGUACUUAUGC---CCAACAGCAGGGCGGCUAUCCCAACCAGCAGAAGCCUCCUGGCUGGUAAACC---UC----CCAUUUG-A------UUUGUAG .......(((......((---((.......))))((.....)).))).(((((((((....))))((....))---..----.......-.------))))).. ( -20.60) >DroMoj_CAF1 1569 89 - 1 AUAUCCCGGCAGUUAUGC---UCAUCAACAGGGCGGCUAUCCCAAUCA---GAAGCCUCCCGGCUGGUAAACUGAGGAAU-CGCAUA--CA------AUUAUCU ...(((...(((((.(((---.((.(....(((.((((.((.......---)))))).))).).)))))))))).)))..-......--..------....... ( -22.00) >DroPer_CAF1 1476 91 - 1 CUAUCCUGGCAGUUAUGCUCCCCAACAGCAAGGCGGCUAUCCCAACCA---GAAGCCACCAGGAUGGUAAACC---GCAUC-CCACCCGUA------UUUAUAC (((((((((..((..((((.......))))..))((((.((.......---)))))).)))))))))......---.....-.........------....... ( -24.90) >consensus AUAUCCAGGCAGUUAUGC___CCAACAGCAGGGCGGCUAUCCCAACCA___GAAGCCACCUGGCUGGUAAACC___GCAU__CCACCUGUA______UUUAUAU ....(((((..((..(((.........)))..))((((.((..........)))))).)))))......................................... ( -9.55 = -10.22 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:01 2006