| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,513,522 – 23,513,632 |
| Length | 110 |
| Max. P | 0.862930 |
| Location | 23,513,522 – 23,513,632 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 76.12 |
| Mean single sequence MFE | -35.83 |
| Consensus MFE | -26.14 |
| Energy contribution | -27.23 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.862930 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23513522 110 + 27905053 CACUUCCUCCAUGCAAAAUCCGCUUCAGAAGACGACGACGUCUGUGCAGACGACUGGCCAAGGAGGGAGUGCGUCGAAUCUGCUUCACAUGGCAAAUCAUCAGCUUACCC ((((((((((..((......((((.((..(((((....))))).)).)).))....))...)))))))))).((.((((.((((......)))).))..)).))...... ( -30.70) >DroSec_CAF1 10677 110 + 1 CACUUCCUCCAUGGAACAUCCGCUUCAGAAGACGACGACGUCUUUGCAGACGACUGCCCAAGGAGGAAGUGCGUCGAAUCCGCUUCACAUGGCAGAUCAUCAGCUUACCC ((((((((((.(((.............(((((((....)))))))((((....))))))).)))))))))).((.(((((.(((......))).)))..)).))...... ( -39.00) >DroSim_CAF1 10083 110 + 1 CACUUCCUCCAUGCAACAUCCGCUUCAGAAGACGACGACGUCUUUGCAGACGACUGCCCAAGGAGGGAGUGCGUCGAACCCGCUUCACAUGGCAGAUCAUCAGUUUACCC ((((((((((.................(((((((....)))))))((((....))))....))))))))))..........(((......)))................. ( -32.10) >DroEre_CAF1 12405 110 + 1 CACUCCCUCCAUGCGACAUCCGCUUCAGAAGACGACGACGCUUUUGCAGGCGACUGCUCAAGGAGGGAGUGCGUCGAAUCCUCUUCACCUGGCGGAUCAUCAGUUUUCCG ((((((((((.((.(.((..(((((((((((.((....)))))))).)))))..))).)).))))))))))....((.(((.((......)).)))))............ ( -41.30) >DroYak_CAF1 10290 98 + 1 CACUUCCUCCG------------UUCAGACGACGACGCCGCUUUUGCAGACGACUGCUUAAGGAGGGAGUGCGUCGAAUCCUCUUCACCUGGCGGAUAGUCAGCUUUCCC (((((((((((------------((.....))))......(((..((((....))))..)))))))))))).((.((((((.((......)).))))..)).))...... ( -28.50) >DroAna_CAF1 10408 110 + 1 UGAUUCCACGUUUCAAUCUCCUUUGCAGGCGACGACGACGUUGCCGGAGUCGCAUGGUCAGGGUGGGUGUGGUGCGGCUUCGCUUGACCUGCCGGAUGGUCAAGUGGCCA .((((((......(((......)))..(((((((....)))))))))))))((((.(.((.......))).))))(((..(((((((((........)))))))))))). ( -43.40) >consensus CACUUCCUCCAUGCAACAUCCGCUUCAGAAGACGACGACGUCUUUGCAGACGACUGCCCAAGGAGGGAGUGCGUCGAAUCCGCUUCACAUGGCAGAUCAUCAGCUUACCC ((((((((((.................(((((((....)))))))((((....))))....))))))))))....(((((((((......)))))))..))......... (-26.14 = -27.23 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:58 2006