| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,496,316 – 23,496,410 |
| Length | 94 |
| Max. P | 0.895403 |
| Location | 23,496,316 – 23,496,410 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 77.80 |
| Mean single sequence MFE | -21.67 |
| Consensus MFE | -17.60 |
| Energy contribution | -17.85 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.895403 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23496316 94 - 27905053 GUCACUGCGAUCGGAGAGCGAGGACACCUUGCGACGUGAUUGCAUAUUGACUGGAGUUAUU-AAA--AGAUAAGUUUC-------AGAUAAUAUUAAAACAAAC .....((((((((....((((((...))))))....))))))))(((((.(((((((((((-...--.))))).))))-------)).)))))........... ( -25.50) >DroSec_CAF1 1003 92 - 1 GUCACUGCGAUCGGAGAGCGAGGAAACCUUGCGACGUGAUUGCAUAUUGACUGAAGGUAUU-A----AGAUAAGUUUA-------AGAUAAUAAUAAAAUAAGC ((((.((((((((....((((((...))))))....))))))))...))))((((..(((.-.----..)))..))))-------................... ( -20.90) >DroSim_CAF1 367 92 - 1 GUCACUGCGAUCGGAGAGCGAGGAAACCUUGCGACGUGAUUGCAUAUUGACUGAAGGUAUU-A----AGAUAAGUUUA-------AGAUAAUAAUCAAAUAAGC ((((.((((((((....((((((...))))))....))))))))...))))..........-.----......(((((-------.(((....)))...))))) ( -21.30) >DroEre_CAF1 955 97 - 1 AUCGCUGCGAUCGGAGAGCGAGGACACCUUGCGACGUGAUUGCAUAUUGACUGGAGGUAUCAUAUGAGAAUAAGUUUG-------GCAUAAUAAUAAAACAAGU ...((((((((((....((((((...))))))....))))))).....((((.......((....)).....)))).)-------))................. ( -21.00) >DroWil_CAF1 891 95 - 1 GUCACUGCGAUCGGAGAGUGAAGAGACCUUACGUCGGGAUUGCAUAUUAACUGGAAUGAUA-A-A--AGGCAU--GUUGAUUUAUGUA-AAU--UAUGAUAAGA .....(((((((...((((((.......)))).))..)))))))......((...((.(((-(-.--..((((--(......))))).-..)--))).)).)). ( -16.10) >DroYak_CAF1 948 95 - 1 GUCACUGCGAUCGGAGAGCGAGGACACCUUGCGACGUGAUUGCAUAUUGACUGGAGAUAUU-UAAACUAAUAAGUUUA-------AGAUAAUAUUAAA-UUAUU ((((.((((((((....((((((...))))))....))))))))...))))........((-((((((....))))))-------))...........-..... ( -25.20) >consensus GUCACUGCGAUCGGAGAGCGAGGACACCUUGCGACGUGAUUGCAUAUUGACUGGAGGUAUU_A_A__AGAUAAGUUUA_______AGAUAAUAAUAAAAUAAGC ((((.((((((((....((((((...))))))....))))))))...))))..................................................... (-17.60 = -17.85 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:55 2006