Locus 8794

Sequence ID 3R_DroMel_CAF1
Location 23,492,336 – 23,492,427
Length 91
Max. P 0.711532
window14124

overview

Window 4

Location 23,492,336 – 23,492,427
Length 91
Sequences 4
Columns 92
Reading direction forward
Mean pairwise identity 87.73
Mean single sequence MFE -10.42
Consensus MFE -8.75
Energy contribution -8.56
Covariance contribution -0.19
Combinations/Pair 1.08
Mean z-score -1.59
Structure conservation index 0.84
SVM decision value 0.38
SVM RNA-class probability 0.711532
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23492336 91 + 27905053
CAAGAACACAUAUGCCAUA-UACACCAUAUAUACCAUAUACAGGUGACACUUCCAAACGAUUCUCGAAAUUCCACACUCUUCAGAGACUCAU
.........(((((..(((-((.....)))))..)))))...(....)..........((.(((((((...........))).)))).)).. ( -10.60)
>DroSec_CAF1 91628 82 + 1
CAAGAACACACAUGCCAUA-GACACCA---------UAUACAGGUGACACUUCCAAACGAUUCUCGAAAUUCCACACUCUUCAGAGACUCAU
...................-..((((.---------......))))............((.(((((((...........))).)))).)).. ( -10.20)
>DroSim_CAF1 81226 82 + 1
CAAGAACACACAUGCCAUA-GACACCA---------UAUACAGGUGACACUUCCAAACGAUUCUCGAAAUUCCACACUCUUCAGAGACUCAU
...................-..((((.---------......))))............((.(((((((...........))).)))).)).. ( -10.20)
>DroYak_CAF1 82982 90 + 1
CAAAAACACACAUACCAUGCCAUACCAUGCAUACC--AUACAGGUGACACUGCCAAACGAUUCUCGAAAUUCCACACUCUUCAGAGACUCAU
................((((........))))...--.....(((......)))....((.(((((((...........))).)))).)).. ( -10.70)
>consensus
CAAGAACACACAUGCCAUA_GACACCA_________UAUACAGGUGACACUUCCAAACGAUUCUCGAAAUUCCACACUCUUCAGAGACUCAU
......................((((................))))............((.(((((((...........))).)))).)).. ( -8.75 =  -8.56 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:54 2006