| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,487,087 – 23,487,180 |
| Length | 93 |
| Max. P | 0.912049 |
| Location | 23,487,087 – 23,487,180 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 74.93 |
| Mean single sequence MFE | -25.24 |
| Consensus MFE | -14.89 |
| Energy contribution | -15.27 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.59 |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.912049 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23487087 93 - 27905053 GGCUCAAAACUGGGUCAAAGAAGGACCUGUCCGAUGGCACGAACAUGGACGUGUGUACAUCUACAUU---UACAUAGAAAGUCAAGGACAUGGGU-G- .(((((.....(((((.......)))))((((..((((..(.((((......)))).).((((....---....))))..)))).)))).)))))-.- ( -24.70) >DroSec_CAF1 86403 87 - 1 GGCUCAAAACUGGGUCAAAGGAGGGCCUGUCCGAUGGCACGU------ACGUGUGUACAUGUACAUU---GACAUAGAAUGUCAAGGACAUGGGU-G- .(((((.....(((((.......)))))((((........((------(((((....))))))).((---(((((...))))))))))).)))))-.- ( -31.10) >DroSim_CAF1 74800 87 - 1 GGCUCAAAACUGGGUCAAAGGAGGGCCUGUCCGAUGGCACGU------ACGUGUGUACAUGUACAUU---GGCAUAGAAUGUCAAGGACAUGGGU-G- .(((((.....(((((.......)))))((((........((------(((((....))))))).((---(((((...))))))))))).)))))-.- ( -30.50) >DroEre_CAF1 77237 89 - 1 GGCUCAAAACUGGGUCAAAGAAGGGCCUGUCUGAUGGCACGAACACGUACGUGCA----UAUACACU---UACAUAGAAUGUCAAGGACAUGAGC-A- .(((((.....(((((.......)))))((((..(((((.......(((.(((..----....))).---)))......))))).)))).)))))-.- ( -25.52) >DroYak_CAF1 77664 81 - 1 GGCUCAAAACUGGGUCAAAGAAAGGCCUGUCUGAAGGCACAAACACGUACGUGUG----UAU-----------AUAGAAUGUCAAGGACAUGGGU-A- .(((((.....(((((.......)))))((((...((((...((((....)))).----...-----------......))))..)))).)))))-.- ( -19.62) >DroAna_CAF1 79308 85 - 1 GGCUCAAAACUAGGUCAAAGAAGGGCCUGUCUCAUAGC-----CACGUACA--------UACAUAUUUGAUACUUGGAAUGUCAAGGCCAAGGACUGC ............((((.......(((((....(((..(-----((.(((((--------........)).))).))).)))...)))))...)))).. ( -20.00) >consensus GGCUCAAAACUGGGUCAAAGAAGGGCCUGUCCGAUGGCACGA_CACGUACGUGUG____UAUACAUU___UACAUAGAAUGUCAAGGACAUGGGU_G_ .(((((.....(((((.......)))))((((....(((((........)))))......................(.....)..)))).)))))... (-14.89 = -15.27 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:52 2006