Locus 8791

Sequence ID 3R_DroMel_CAF1
Location 23,484,733 – 23,484,824
Length 91
Max. P 0.752572
window14120

overview

Window 0

Location 23,484,733 – 23,484,824
Length 91
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 83.21
Mean single sequence MFE -17.05
Consensus MFE -12.84
Energy contribution -12.64
Covariance contribution -0.20
Combinations/Pair 1.17
Mean z-score -1.80
Structure conservation index 0.75
SVM decision value 0.48
SVM RNA-class probability 0.752572
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23484733 91 - 27905053
CCCCGUUUUCGAAAA--UA---AAAAGGGUGGUCAACACCCACCUCUGCUAAAGUAUUUUUAAAAACAAUUAAUGAGGCAGCAUAAUAAA----AUGA-AA
....(((((..((((--((---....(((((.....)))))....((.....))))))))..))))).......................----....-.. ( -16.60)
>DroSec_CAF1 84034 89 - 1
CCCCGUUUUCGAAAA--------AAAGGGUGGUCAACACCCACCUCUGCUGAAGUAUUUUUAA-AACAAUUAAUGAGGCAGCAUAUUAGAAA--AAGA-AA
.....(((((.....--------...(((((.....))))).....(((((...((((..(..-....)..))))...))))).....))))--)...-.. ( -19.20)
>DroSim_CAF1 72418 90 - 1
CCCCGUUUUCGAAAA-------AAAAGGGUGGUCAACACCCACCUCUGCUGAAGUAUUUUUAA-AACAAUUAAUGAGGCAGCAUAACAAAAA--AAGA-AA
......((((.....-------....(((((.....))))).....(((((...((((..(..-....)..))))...))))).........--..))-)) ( -17.50)
>DroEre_CAF1 74925 96 - 1
CCCCGUUUUCAGAAAAAAAAAUAAAAGGGUGGUCAACACCCAGCUUUGCCAAAGUAUUUUUAA-AGCAAUUAAUUAGGCAACCCAAUCAAA---AUGA-AA
...((((((.................(((((.....))))).(..(((((.((..(((.....-...)))...)).)))))..)....)))---))).-.. ( -16.20)
>DroYak_CAF1 75192 97 - 1
CCCCGUUUUCGAACUGAAA---AAAAGGGUGGUCAACACCCACCUCUGCUAAAGUAUUUUUAC-AACAAUUAAUGAGGCAAUCUAAUCAAAUGAAUGAUAA
...(((((......(((..---....(((((.....))))).((((.......(((....)))-..........))))........)))...))))).... ( -15.73)
>consensus
CCCCGUUUUCGAAAA___A___AAAAGGGUGGUCAACACCCACCUCUGCUAAAGUAUUUUUAA_AACAAUUAAUGAGGCAGCAUAAUAAAA___AUGA_AA
..........................(((((.....)))))....(((((....((..............))....))))).................... (-12.84 = -12.64 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:51 2006