Locus 8790

Sequence ID 3R_DroMel_CAF1
Location 23,484,437 – 23,484,557
Length 120
Max. P 0.500000
window14119

overview

Window 9

Location 23,484,437 – 23,484,557
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 93.33
Mean single sequence MFE -35.55
Consensus MFE -30.57
Energy contribution -29.99
Covariance contribution -0.58
Combinations/Pair 1.14
Mean z-score -1.38
Structure conservation index 0.86
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23484437 120 + 27905053
CUGCUCCUUCUCCUUCUUGACCUGUGAGUAGAUGGGCAGGAACUCAUCCAGCUUGAUCUUCUUCUCGUUGCGCUUCUUGGUGCCGCCCAAUUUCUCGAUCAGCGCCAAGGUGGGGUUCAA
((((.((.(((.((((.......).))).))).))))))((((((...((((..((......))..))))(((..((((((((.(..(........)..).))))))))))))))))).. ( -35.40)
>DroVir_CAF1 99337 120 + 1
CUGCUCCUUCUCCUUCUUCACUUGCGAGUAGAUGGGCAGGAAUUCGUCCAAUUUGAUCUUCUUCUCGUUGCGCUUCUUGGUGCCACCCAUUUUCUCGAUCAGAGCCAGGGUGGGGUUCAA
.((..(((..((((..(((.....((((.(((((((..(((.....)))....................(((((....)))))..))))))).))))....)))..))))..)))..)). ( -34.00)
>DroGri_CAF1 97392 120 + 1
CUGCUCCUUCUCCUUCUUCACUUGCGAGUAGAUGGGCAGGAAUUCGUCCAACUUGAUCUUCUUCUCGUUGCGCUUCUUGGUGCCGCCCAUUUUCUCGAUCAGCGCCAAGGUGGGGUUCAA
..(((((....((((...(.((..((((.((((((((.(((.....)))(((..((......))..)))(((((....))))).)))))))).))))...)).)..)))).))))).... ( -38.00)
>DroWil_CAF1 79699 120 + 1
CUGUUCCUUCUCCUUCUUAACCUGUGAGUAGAUGGGCAGGAACUCAUCCAACUUGAUCUUCUUCUCGUUGCGCUUCUUGGUGCCACCCAUUUUCUCGAUGAGAGCCAAGGUGGGGUUCAA
.((..((((..((((((((.....((((.(((((((..(((.....)))(((..((......))..)))(((((....)))))..))))))).)))).)))))....))).))))..)). ( -31.40)
>DroMoj_CAF1 108978 120 + 1
CUGCUCCUUCUCCUUCUUCACUUGCGAGUAGAUGGGCAGGAAUUCCUCCAAUUUGAUCUUCUUCUCGUUGCGCUUCUUGGUGCCGCCCAUUUUCUCGAUCAAAGCGAGGGUGGGGUUCAA
.........((((.(((((.(((.((((.((((((((.(((.....)))....................(((((....))))).)))))))).))))....))).))))).))))..... ( -40.90)
>DroPer_CAF1 82924 120 + 1
CUGCUCCUUCUCCUUCUUGACCUGUGAGUAAAUGGGCAGGAAUUCGUCCAUCUUGAUCUUCUUCUCGUUGCGCUUCUUGGUGCCACCCAUUUUCUCGAUCAGAGCCAAGGUGGGGUUCAA
.........((((.(((((.((((((((.((((((((((((.........)))))..............(((((....)))))..))))))).))))..))).).))))).))))..... ( -33.60)
>consensus
CUGCUCCUUCUCCUUCUUCACCUGCGAGUAGAUGGGCAGGAAUUCGUCCAACUUGAUCUUCUUCUCGUUGCGCUUCUUGGUGCCACCCAUUUUCUCGAUCAGAGCCAAGGUGGGGUUCAA
..(((((....((((.........((((.(((((((..(((.....)))....................(((((....)))))..))))))).)))).........)))).))))).... (-30.57 = -29.99 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:50 2006