Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,972,962 – 2,973,052 |
Length | 90 |
Max. P | 0.780986 |
Location | 2,972,962 – 2,973,052 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 72.93 |
Mean single sequence MFE | -16.36 |
Consensus MFE | -2.34 |
Energy contribution | -2.30 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.17 |
Mean z-score | -1.70 |
Structure conservation index | 0.14 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.780986 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2972962 90 + 27905053 UGUAUUCAGUGUGUAU-----------UCUAUCGCAAAAAUUCUGUCAAAGAAUUUCUGGGCUUUUUAAGAAAUAUUUUUAAAUACUGAAUAAUAACAAAC ..((((((((((....-----------.....(.((.(((((((.....))))))).)).)....((((((.....))))))))))))))))......... ( -17.80) >DroSec_CAF1 19566 76 + 1 U------------UAG-----------UCUAUCGCAA-AAUUCUGUUCAAGAAUUUCUGGGCUUUUUAAGAAAUAUU-UAAAAUACUAAAUGAUAACUGAC (------------(((-----------(.((((((((-((((((.....))))))).))((..(((((((.....))-)))))..))...)))))))))). ( -12.00) >DroSim_CAF1 17494 77 + 1 U------------CAG-----------UCUAUCGCAAAAAUUCUGUCAAAGAAUUUCUGGGCUUUUUAAGAAAUAUU-UAAAAUACUGAAUAAUAACAAAC (------------(((-----------(....(.((.(((((((.....))))))).)).)..(((((((.....))-))))).)))))............ ( -11.00) >DroEre_CAF1 18209 97 + 1 UAUAUUCAGUGUGUAUGCGUAAGUGUGGGUAUCCGAAAAAUUCUGUCAAAAGUUUUCUGGGCUUUUUAAGAAAUAUU-UAAAAUACUGAAUAAUA---AAC ..((((((((((.(((((....))))).............((((...(((((((.....)))))))..)))).....-....))))))))))...---... ( -20.90) >DroYak_CAF1 15581 96 + 1 UAUAUUCAGUGUGUAUGCCU-AGUGUGUGUAUCAGGAAAAUUCUCUCAAAAGUUUUCUGGGCUUUUUAAGAAAAUUU-UAAAAUACUGAAUAAUA---AAC ..((((((((((.....(((-.(((....))).)))((((((.(((.(((((((.....)))))))..))).)))))-)...))))))))))...---... ( -20.10) >consensus U_UAUUCAGUGUGUAU___________UCUAUCGCAAAAAUUCUGUCAAAGAAUUUCUGGGCUUUUUAAGAAAUAUU_UAAAAUACUGAAUAAUAAC_AAC ....................................................((((((..........))))))........................... ( -2.34 = -2.30 + -0.04)
Location | 2,972,962 – 2,973,052 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 72.93 |
Mean single sequence MFE | -14.38 |
Consensus MFE | -2.32 |
Energy contribution | -3.68 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.09 |
Mean z-score | -1.63 |
Structure conservation index | 0.16 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.701315 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2972962 90 - 27905053 GUUUGUUAUUAUUCAGUAUUUAAAAAUAUUUCUUAAAAAGCCCAGAAAUUCUUUGACAGAAUUUUUGCGAUAGA-----------AUACACACUGAAUACA .........((((((((.(((((.........)))))....(((((((((((.....)))))))))).).....-----------......)))))))).. ( -14.60) >DroSec_CAF1 19566 76 - 1 GUCAGUUAUCAUUUAGUAUUUUA-AAUAUUUCUUAAAAAGCCCAGAAAUUCUUGAACAGAAUU-UUGCGAUAGA-----------CUA------------A (((...((((((((((....)))-)))............((...((((((((.....))))))-))))))))))-----------)..------------. ( -10.80) >DroSim_CAF1 17494 77 - 1 GUUUGUUAUUAUUCAGUAUUUUA-AAUAUUUCUUAAAAAGCCCAGAAAUUCUUUGACAGAAUUUUUGCGAUAGA-----------CUG------------A (((((((........((.(((((-(.......)))))).)).((((((((((.....)))))))))).))))))-----------)..------------. ( -13.70) >DroEre_CAF1 18209 97 - 1 GUU---UAUUAUUCAGUAUUUUA-AAUAUUUCUUAAAAAGCCCAGAAAACUUUUGACAGAAUUUUUCGGAUACCCACACUUACGCAUACACACUGAAUAUA ...---...((((((((.(((((-(.......)))))).((...(((((.(((.....))).)))))((....))........))......)))))))).. ( -13.90) >DroYak_CAF1 15581 96 - 1 GUU---UAUUAUUCAGUAUUUUA-AAAUUUUCUUAAAAAGCCCAGAAAACUUUUGAGAGAAUUUUCCUGAUACACACACU-AGGCAUACACACUGAAUAUA ...---...((((((((.....(-((((((((((((((............)))))))))))))))((((..........)-))).......)))))))).. ( -18.90) >consensus GUU_GUUAUUAUUCAGUAUUUUA_AAUAUUUCUUAAAAAGCCCAGAAAUUCUUUGACAGAAUUUUUGCGAUAGA___________AUACACACUGAAUA_A ........................................(.((((((((((.....)))))))))).)................................ ( -2.32 = -3.68 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:27 2006