| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,479,490 – 23,479,589 |
| Length | 99 |
| Max. P | 0.648387 |
| Location | 23,479,490 – 23,479,589 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 93.47 |
| Mean single sequence MFE | -23.12 |
| Consensus MFE | -19.75 |
| Energy contribution | -21.50 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.648387 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23479490 99 - 27905053 CCAAUUCAAUGCAAGCCCAAUUCCAUUACCAAUUC-CCAUCCCAGUUGGCUUACACCGCUUUGGGCAGACGCCGCAUAAUUUGUUGUUCUGCUGGAAGUU .........((.(((((.((((.............-.......))))))))).))..(((((.((((((.((.(((.....))).)))))))).))))). ( -22.55) >DroSec_CAF1 78851 100 - 1 CCAAUCCAAUGCAAGCCCAAUUCCAUUACCAAUUCCCCAUCCCAGUUGGCUUGCACCGCUUUGGGCAGACGCCGCAUAAUUUGUUGUUCUGCUGGAAGUU .........((((((((.((((.....................))))))))))))..(((((.((((((.((.(((.....))).)))))))).))))). ( -29.10) >DroEre_CAF1 69505 95 - 1 CCAAUCC----CAAUUCCAAUUCCAUUACCAAUUC-CCAUCCCAGUUGGCUUGUACCGCUUUGGGCAGACGCCGCAUAAUUUGUUGUUCUGCUGGAAGUU .......----.................((((((.-.......))))))........(((((.((((((.((.(((.....))).)))))))).))))). ( -21.20) >DroYak_CAF1 69763 99 - 1 CCAAUCCAAUUCAAACCCAAUUCCAUUAGCAAUUC-CCAUCCCAGUUGGCUUAUACCGCUUUGGGCAGACGCCGCAUAAUUUGUUGUUCUGCUGGAAGUU ....((((..............(((..(((.....-(((.......)))........))).)))(((((.((.(((.....))).))))))))))).... ( -19.62) >consensus CCAAUCCAAUGCAAGCCCAAUUCCAUUACCAAUUC_CCAUCCCAGUUGGCUUACACCGCUUUGGGCAGACGCCGCAUAAUUUGUUGUUCUGCUGGAAGUU .........((((((.((((((.....................))))))))))))..(((((.((((((.((.(((.....))).)))))))).))))). (-19.75 = -21.50 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:48 2006