Locus 8787

Sequence ID 3R_DroMel_CAF1
Location 23,478,580 – 23,478,700
Length 120
Max. P 0.714259
window14116

overview

Window 6

Location 23,478,580 – 23,478,700
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 90.00
Mean single sequence MFE -38.98
Consensus MFE -31.59
Energy contribution -32.52
Covariance contribution 0.94
Combinations/Pair 1.14
Mean z-score -1.66
Structure conservation index 0.81
SVM decision value 0.38
SVM RNA-class probability 0.714259
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23478580 120 + 27905053
UGUCGCCAUCUACGAGUACCUCUUCAAGGAGGGUGUGCUCGUGGCCAAGAAGGACUCGCCCAUCCAGAAGCACUCCGAACUGGAUAAGAUUCCCAAUCUGCAAGUCAUCAAGGUGAUGCA
.((((((..(((((((((((((((....))))).))))))))))....((..((((.((..((((((...(.....)..)))))).((((.....)))))).)))).))..))))))... ( -43.80)
>DroSec_CAF1 77976 120 + 1
UAUCGCCAUCUACGAGUACCUCUUCAAGGAGGGCGUGCUCGUGGCCAAAAAGGAUUCGCCCAUCCAGAAGCACCCCGAACUGGACAAGAUUCCCAAUCUGCAAGUAAUCAAGGUGAUGCA
(((((((..(((((((((((((((....))))).)))))))))).......(((.((.....(((((...(.....)..)))))...)).)))..................))))))).. ( -39.60)
>DroEre_CAF1 68561 120 + 1
CAUCGCCAUUUACGAGUACCUCUUCAAGGAGGGUGUGCUCGCGGCCAAGAAGGACUCGCCCAUCACGAAGCACCCGGAUCUGGAGAAGAUUCCCAAUUUGCAAGUCAUCAAGGUGAUGAA
(((((((.....((((((((((((....))))).))))))).(((...((.((......)).)).....(((...((((((.....))))))......)))..))).....))))))).. ( -39.30)
>DroYak_CAF1 68834 120 + 1
UGUCGCCAUCUACGAGUUCCUCUUCAAGGAGGGUGUGCUGGUGGCGAAGAAGGACUCGCCCAUACAGAAGCACCCGGAUCUGGAGAAGAUACCCAAUUUGCAAGUCAUCAAGGUAAUGCA
.((..((.(((.(.((.((((((....)))((((((.(((..(((((........)))))....)))..))))))))).)).)))).(((((...........)).)))..))..))... ( -33.20)
>consensus
UAUCGCCAUCUACGAGUACCUCUUCAAGGAGGGUGUGCUCGUGGCCAAGAAGGACUCGCCCAUCCAGAAGCACCCCGAACUGGAGAAGAUUCCCAAUCUGCAAGUCAUCAAGGUGAUGCA
(((((((..(((((((((((((((....))))).))))))))))........((((.((...(((((............)))))..((((.....)))))).)))).....))))))).. (-31.59 = -32.52 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:47 2006