| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,474,803 – 23,474,908 |
| Length | 105 |
| Max. P | 0.614448 |
| Location | 23,474,803 – 23,474,908 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 77.18 |
| Mean single sequence MFE | -41.40 |
| Consensus MFE | -19.97 |
| Energy contribution | -21.63 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.614448 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23474803 105 + 27905053 UCUCGCCUGCGGUGUCGGUGCAGAAAUGUGCAAGUGUCUGGUAACCCAAUAUGUGGCGGAGC--------CACUUUUUGGUGGCCAAUGCCAUCGAUAUACACCCACAUGCUC ....((.((.(((((..(..((....))..)..((((((((....)))....((((((..((--------((((....))))))...)))))).))))))))))..)).)).. ( -37.50) >DroPse_CAF1 74564 105 + 1 UCUCGCCUGCGGUGUCGGUGCAGAAAUGUGCAAGUGUCGGGUAACCCAAUACCUGGCAGGUCUCUAGUUUCCAA-CCUGGCGGCCACUGCCACUGCCA-------GCAGCAGC ....((..((((((.(((((((....))).....(((((((((......)))))))))((((.((((.......-.)))).)))))))).))))))..-------))...... ( -40.30) >DroEre_CAF1 64748 105 + 1 UCUCGCCUGCGGUGUCGGUGCAGAAAUGUGCAAGUGUCGGGUAACCCAAUAUGUGGCGGAGC--------CGCUUUUUGGUGGCCAAUGCCACUGAUACAUACCCACAUGCUC ....((.((.(((((..(..((....))..)..((((((((...))).....((((((..((--------((((....))))))...)))))).))))))))))..)).)).. ( -41.60) >DroYak_CAF1 64936 105 + 1 UCUCGGCUGCGGUGUCGGUGCAGAAAUGUGCAAGUGUCGGGUAACCCAAUACGUGGCGGAGU--------CGCUUUUUGGUGGCCAAUGCCAUCGAUAUAUACCCGCAUGCUC ....((((((((((((((..((....))..)..((((.(((...))).))))((((((..((--------((((....))))))...))))))))))).....))))).))). ( -41.30) >DroAna_CAF1 67234 110 + 1 UAUCGCCUGCGGUGUCGGUGCAGAAAUGUGCAAGUGUCGGGUAACCCAAUACCCGGCAGGGCUCCGGCGCCACA-ACUGGCGGCCAAUGCCAC--ACAUAUCCCCGCCAGCUC .......((.((((((((.(((....)))((...(((((((((......)))))))))..)).)))))))).))-.(((((((...(((....--.)))....)))))))... ( -47.40) >DroPer_CAF1 73039 105 + 1 UCUCGCCUGCGGUGUCGGUGCAGAAAUGUGCAAGUGUCGGGUAACCCAAUACCUGGCAGGUCUCUAGUUUCCAA-CCUGGCGGCCACUGCCACUGCCA-------GCAGCAGC ....((..((((((.(((((((....))).....(((((((((......)))))))))((((.((((.......-.)))).)))))))).))))))..-------))...... ( -40.30) >consensus UCUCGCCUGCGGUGUCGGUGCAGAAAUGUGCAAGUGUCGGGUAACCCAAUACCUGGCAGAGC________CACA_UCUGGCGGCCAAUGCCACUGACAUAUACCCGCAUGCUC ......((((((..(..(..((....))..)..)..))(((...)))........))))..................(((((.....)))))..................... (-19.97 = -21.63 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:46 2006