Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 23,473,904 – 23,474,000 |
Length | 96 |
Max. P | 0.569100 |
Location | 23,473,904 – 23,474,000 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 87.78 |
Mean single sequence MFE | -40.78 |
Consensus MFE | -32.85 |
Energy contribution | -34.27 |
Covariance contribution | 1.42 |
Combinations/Pair | 1.04 |
Mean z-score | -1.96 |
Structure conservation index | 0.81 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.569100 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23473904 96 - 27905053 CCGCAACUCAAUAUGCAGCAGGCUCGUCUGCCCAAUGCCGGCGGACAGCUUAGCCCGCCGGGCCAGGGACCACCAAGGCCACCAGGCGGAUUUCCU ..(((........))).(((((((.(((((((.......)))))))))))).))(((((.((((..((....))..))))....)))))....... ( -42.40) >DroPse_CAF1 73682 96 - 1 CCACAGCUGAGUCUGCAGCAGCCACGUCCGCCCAAUGCAGGAGGACCUCUUUCGCCGCCCGGACAGGGACCUCCACGGCCGCCCGGCGGUUUCCCC .....((((......))))((((..((((..((......)).)))).......((((..(((....((....))....)))..))))))))..... ( -32.40) >DroSec_CAF1 73231 96 - 1 CCGCAACUCAACAUGCAGCAGGCUCGUCUGCCCAAUGCCGGCGGACAGCUUAGUCCGCCGGGCCAGGGACCACCAAGGCCACCAGGCGGAUUUCCC ..(((........)))...(((((.(((((((.......))))))))))))((((((((.((((..((....))..))))....)))))))).... ( -43.00) >DroSim_CAF1 62019 96 - 1 CCGCAACUCAACAUGCAGCAGGCUCGUCUGCCCAAUGCCGGCGGGCAGCUUAGUCCGCCGGGCCAGGGACCACCAAGGCCACCAGGCGGAUUUCCC ..(((........)))...(((((.(((((((.......))))))))))))((((((((.((((..((....))..))))....)))))))).... ( -42.40) >DroEre_CAF1 63822 96 - 1 CCGCAACUCAACAUGCAGCAGGCGCGUCUGCCCAAUGCCGGGGGACAGCUGAGUCCGCCGGGCCAAGGACCACCGAGGCCACCGGGCGGAUUUCCC ..(((........)))....((...((((((((.....(((.((((......)))).)))((((..((....))..))))...))))))))..)). ( -41.40) >DroYak_CAF1 64049 96 - 1 CCGCAACUCAAUAUGCAGCAGGCUCGCCUGCCCAAUGCCGGCGGACAGCUGAGUCCGCCGGGCCAAGGACCACCAAGGCCACCAGGCGGAUUUCCC ((((..........((((((((....)))))....)))((((((((......))))))))((((..((....))..)))).....))))....... ( -43.10) >consensus CCGCAACUCAACAUGCAGCAGGCUCGUCUGCCCAAUGCCGGCGGACAGCUUAGUCCGCCGGGCCAGGGACCACCAAGGCCACCAGGCGGAUUUCCC ((((..........(((...(((......)))...)))((((((((......))))))))((((..((....))..)))).....))))....... (-32.85 = -34.27 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:45 2006