Locus 8784

Sequence ID 3R_DroMel_CAF1
Location 23,473,729 – 23,473,819
Length 90
Max. P 0.938302
window14113

overview

Window 3

Location 23,473,729 – 23,473,819
Length 90
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 75.55
Mean single sequence MFE -44.82
Consensus MFE -25.90
Energy contribution -26.34
Covariance contribution 0.44
Combinations/Pair 1.22
Mean z-score -2.04
Structure conservation index 0.58
SVM decision value 1.27
SVM RNA-class probability 0.938302
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23473729 90 + 27905053
GUGGUGGUU-G------------------UUGCUGUUGCGGUUGCAUGGGCGGCUGGUUGAAAGGCGGUCGAUUGAAGGGUGCCUGCAGCGGCUGUCCCGGCGGCGGGC
(..(..((.-.------------------..))..)..).(((((..(((((((((.(((..(((((.((.......)).))))).))))))))))))..))))).... ( -39.60)
>DroPse_CAF1 73489 105 + 1
GUGGUGGG-GCCUGUUGAUGUGGGGGCUGCUGCUGCAGCUGUUGCAUGGGCUGCUGAUUGAAGGUCGGUCG---GAAUGGCGCCUGCAGCGGCUGGCCCGGUGCCGGGC
(..(..((-((((.(......).))))).)..)..)((((((((((.(((((.(((((((.....))))))---)...))).)))))))))))).(((((....))))) ( -54.80)
>DroSec_CAF1 73056 90 + 1
GUGGUGGUU-G------------------UUGCUGUUGCGGUUGCAUGGGCGGCUGGUUGAAGGGCGGUCGAUUGAAGGGCGCCUGCAGCGGCUGACCCGGCGGCGGGC
(..(..((.-.------------------..))..)..).(((((.((((((((((.(((..(((((.((.......)).))))).))))))))).))))))))).... ( -41.10)
>DroEre_CAF1 63638 99 + 1
GUGGUGGU-GGUUGCUGUUG---------UUGCGGUUGCGGUUGCAUGGGCGGCUGGUUGAAGGGCGGUCGACUGAAGGGUACCUGCAGCGGCUGACCCGGCGGCGGGC
((..(.((-..((((.....---------..))))..)).)..)).......(((.((((..(((((((((.(((.(((...))).))))))))).)))..)))).))) ( -41.40)
>DroPer_CAF1 72083 105 + 1
GUGGUGGG-GCCUGUUGAUGUGGGGGCUGCUGCUGCAGCUGUUGCAUGGGCUGCUGAUUGAAGGUCGGUCG---GAAUGGCGUCUGCAGCGGCUGGCUCGGUGCUGGGC
(..(..((-((((.(......).))))).)..)..)((((((((((.(.(((.(((((((.....))))))---)...))).).)))))))))).(((((....))))) ( -47.20)
>consensus
GUGGUGGU_GG_UG_UG_UG_________UUGCUGUUGCGGUUGCAUGGGCGGCUGGUUGAAGGGCGGUCGA_UGAAGGGCGCCUGCAGCGGCUGACCCGGCGGCGGGC
...............................((((((((((.(((.....((((((.........))))))........))).))))))))))...((((....)))). (-25.90 = -26.34 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:44 2006