| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,461,010 – 23,461,130 |
| Length | 120 |
| Max. P | 0.862861 |
| Location | 23,461,010 – 23,461,130 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.11 |
| Mean single sequence MFE | -43.78 |
| Consensus MFE | -30.08 |
| Energy contribution | -30.67 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.862861 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23461010 120 + 27905053 CAGCAUUCCUGUCGUGCAUUAGGGAAGCCAUGGGGAACUUGGCAAUGGAAAAGGCCAGAUUAACAGCUUGACCUAAAGCUGUGCCUGUGGCCACAACGCGAUUCACUAAACCGAUUCGCC .....((((((........)))))).((((.((....)))))).........(((((.(...(((((((......)))))))...).))))).....((((.((........)).)))). ( -40.50) >DroVir_CAF1 69119 120 + 1 UCGCAUUACGAUCGUGCUGCAGCGAGGCCAAUGGAAACUUGGCUAUCGAAAAUGCCAGGUUGACUGCCUGGCCCAGCGCUGUGCCUGUGGCCACAAUUCGAUUGACUAGUCCAAUGCGCA .((((((..((((((((((...(((((((((.(....))))))).))).....(((((((.....))))))).))))))((((((...)).))))....))))((....)).)))))).. ( -46.70) >DroPse_CAF1 60461 120 + 1 CAGCGUUCCGGUCGUGCAUCAGCGAACCCAUGGGAAAUUUGGCAAUCGAGAAGGCUAAAUUUACGGCCUGGCCAAGGGCUGUGCCCGUGGCAACGAUUCGAUUUACCAGUCCGAUGCGCA ..((((..(((.((((.(((..((...((((((((((((((((..........)))))))))(((((((......))))))).)))))))...))....))).)))..).)))..)))). ( -44.80) >DroWil_CAF1 53249 120 + 1 CAGCAUUACGAUCAUGCUGGAGUGAGGACAGGGGAAAUUUGGCUAUGGAAAAUGCCAAAUUGACGGCUUGUCCAAGAGCUGUGCCAGUGGCCACCAUACGAUUGACUAGACCGAUUCGCA ((((((.......))))))..((((((((((((..((((((((..........))))))))..)..)))))))..(..(((.(.((((.(........).)))).))))..)...)))). ( -34.90) >DroMoj_CAF1 70712 120 + 1 UCGCAUUUCGAUCGUGCUGCAGCGAGGCCAUGGGGAACUUGGCAAUGGAGAAGGCUAAAUUGACGGCCUGGCCCAGGGCUGUGCCCGUGGCCACGAUUCGAUUGACCAGGCCAAUGCGUA .((((((((((((((((....))).(((((((((.(....(((..(((...(((((........)))))...)))..))).).)))))))))......))))))).......)))))).. ( -49.41) >DroPer_CAF1 59001 120 + 1 CAGCGUUUCGGUCGUGCAUCAGCGAACCCAUGGGAAAUUUGGCAAUCGAGAAGGCUAAAUUUACGGCCUGACCAAGGGCUGUGCCCGUGGCAACGAUUCGAUUCACCAGGCCUAUGCGCA ..((((...(((((((.(((..((...((((((((((((((((..........)))))))))(((((((......))))))).)))))))...))....))).)))..))))...)))). ( -46.40) >consensus CAGCAUUACGAUCGUGCAGCAGCGAAGCCAUGGGAAACUUGGCAAUCGAAAAGGCCAAAUUGACGGCCUGGCCAAGGGCUGUGCCCGUGGCCACGAUUCGAUUGACCAGACCGAUGCGCA ..(((((....((((......)))).((((((((.((((((((..........)))))))).(((((((......))))))).)))))))).....................)))))... (-30.08 = -30.67 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:38 2006