| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,454,733 – 23,454,826 |
| Length | 93 |
| Max. P | 0.920923 |
| Location | 23,454,733 – 23,454,826 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 76.47 |
| Mean single sequence MFE | -29.83 |
| Consensus MFE | -16.71 |
| Energy contribution | -16.52 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.56 |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.920923 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23454733 93 + 27905053 --AUUCCUAGGAAUCC-ACAACAGUUGAGUAAAAAAGCCCAGCCUCGGGCUGUGAAAUAGGCAGCUGGCUUGGGUUGAUCGGCUCAAAGAGUGAGG --((((....))))((-.((....((((((.....(((((((((...((((((.......))))))))).)))))).....))))))....)).)) ( -32.90) >DroSec_CAF1 54163 92 + 1 --AUUCCUAGGAAUCA-ACAACAGUUGAGUGAAAAAGCCCCGCCUCGGGCUGCGAAAUAGGCAGCUGGCUUG-GUUGAUCGGCUCAAAGAGUGAGG --((((....))))..-.((....((((((((...((((..(((...((((((.......)))))))))..)-)))..)).))))))....))... ( -27.70) >DroSim_CAF1 46845 92 + 1 --AUUCCUAGGAAUCC-ACAACAGUUGAGUGAAAAAGCCCAGCCUCGGGCUGCGAAAUAGGCAGCUGGCCUG-GUUGAUCGGCUCAAAGAGUGAGG --((((....))))((-.((....((((((((...((((..(((...((((((.......)))))))))..)-)))..)).))))))....)).)) ( -29.30) >DroEre_CAF1 44879 83 + 1 AAGUUCCUGGG-----------GGUUGGGGAAAAGUGCCCAGCCUCGGGCUGUGAAAUAGGCAGCUGGCA-G-GUUGAUCGGCUCAAAGAGCAGGG .....((((((-----------(((((((........)))))))))((((((...(((..((.....)).-.-)))...))))))......)))). ( -35.10) >DroYak_CAF1 45567 93 + 1 AAGUUCCUAGGAAUCC-ACAAGCGUUGAGUAAAAAUGCCCAGCCUCGGGCUGCGAAAUAGGCAGCUGGCA-G-GUUGAUCGGCUCAAAGAGUAAGG ..((((....))))..-....((.((((((.....((..(((((((.((((((.......)))))).).)-)-))))..))))))))...)).... ( -28.10) >DroAna_CAF1 46897 88 + 1 CUAUUUAGGGGAAACUGAAAUGGAUUGAGAGCAAAAUGACUGCCUCGGGCAGUAAAGUAGGCAGCUGGCA-G-UUUGAGCCUUUCAAAG------G ((((((..((....)).)))))).(((((((......(((((((...(((.((.......)).)))))))-)-)).....)))))))..------. ( -25.90) >consensus __AUUCCUAGGAAUCC_ACAACAGUUGAGUAAAAAAGCCCAGCCUCGGGCUGCGAAAUAGGCAGCUGGCA_G_GUUGAUCGGCUCAAAGAGUGAGG ........................((((((.....(((...(((...((((((.......)))))))))....))).....))))))......... (-16.71 = -16.52 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:37 2006