Locus 8778

Sequence ID 3R_DroMel_CAF1
Location 23,445,495 – 23,445,588
Length 93
Max. P 0.731316
window14102

overview

Window 2

Location 23,445,495 – 23,445,588
Length 93
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 76.52
Mean single sequence MFE -22.32
Consensus MFE -10.35
Energy contribution -10.52
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -2.06
Structure conservation index 0.46
SVM decision value 0.42
SVM RNA-class probability 0.731316
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23445495 93 + 27905053
AAUAUUCA-CGUUUGGAGGAGC----ACUCGCAGCCACUCUC------ACC--------AUGUCCAAUUGUUGCAUACGGAUUCAAUCAAUCA-AUUAUGCAACUGCC-CGUCC
.......(-(((.(((((..((----.......))..))).)------)..--------))))......((((((((..((((.....)))).-..))))))))....-..... ( -18.30)
>DroSec_CAF1 45105 94 + 1
AAUAUUCA-CGUUUGGAGGAGC----ACUCCCAGCCACUCUC------ACC--------AUGUCCAAUUGUUGCAUACGGAUUCAAUCAAUCA-AUUAUGCAACUGCCCCGGCC
........-.(((.((((....----.)))).))).......------...--------..........((((((((..((((.....)))).-..)))))))).((....)). ( -20.50)
>DroSim_CAF1 37452 95 + 1
AAUAUUCA-CGUUUGGAGGAGC----ACUCCCAGCCACACUC------ACC--------AUGUCCAAUUGUUGCAUACGGAUUCAAUCCAUCAAAUUAUGCAACUGCCCCGGCC
........-.(((.((((....----.)))).))).......------...--------..........((((((((..(((.......)))....)))))))).((....)). ( -18.60)
>DroEre_CAF1 35518 103 + 1
CAUAUUCC-CGUUCGG---ACC----ACUCU-GGCCACUCACUGGCCAACCAGUUGUCUCUGUCCAAUUGUUGCAUACGGAUUCAAUCAAUCA-AUUAUGCAACUGCC-CUGCC
........-.....((---((.----(((.(-(((((.....))))))...))).))))..........((((((((..((((.....)))).-..))))))))....-..... ( -25.80)
>DroYak_CAF1 35867 103 + 1
AAUAUUCC-CGUGCGG---AGC----ACUCU-AGGCACUCACUGGCCAACCAGUUGUCUCUGUCCAAUUGUUGCAUACGGAUUCAAUCAAUCA-AUUAUGCAACUGCC-UGGCC
........-.((((..---.))----)).((-(((((...(((((....)))))...............((((((((..((((.....)))).-..))))))))))))-))).. ( -29.90)
>DroAna_CAF1 37574 107 + 1
AAAGCCCAACGCCCACA-AAACACAUAGUCCGAGCCACUCGAUGACUAACCA----UCUCUCUUCAAUUGUUGCAUACGGAUUCAAUCAAUCA-AUUAUGCAACAGCC-CUGCC
..........((.....-.......(((((((((...))))..)))))....----...........((((((((((..((((.....)))).-..))))))))))..-..)). ( -20.80)
>consensus
AAUAUUCA_CGUUCGGA_GAGC____ACUCCCAGCCACUCUC______ACC________AUGUCCAAUUGUUGCAUACGGAUUCAAUCAAUCA_AUUAUGCAACUGCC_CGGCC
.....................................................................((((((((..((((.....))))....)))))))).......... (-10.35 = -10.52 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:34 2006