Locus 8777

Sequence ID 3R_DroMel_CAF1
Location 23,437,511 – 23,437,610
Length 99
Max. P 0.998880
window14101

overview

Window 1

Location 23,437,511 – 23,437,610
Length 99
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 91.57
Mean single sequence MFE -28.88
Consensus MFE -27.42
Energy contribution -26.90
Covariance contribution -0.52
Combinations/Pair 1.13
Mean z-score -2.01
Structure conservation index 0.95
SVM decision value 3.26
SVM RNA-class probability 0.998880
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23437511 99 - 27905053
CUGUGUGCGUUGCCCUCGACUCGCAAAGUUUUGUGACGUCGGCCACAGGAAAAUAUUCCACAUACCACAUAGCGUUC------UCGUUCACAUGACGACAUGUAU
(((((((.((.(((...(((((((((....)))))).)))))).)).((((....))))......))))))).(((.------((((....)))).)))...... ( -27.60)
>DroSec_CAF1 30158 99 - 1
CUGUGUGCGUUGCCCUCGACUCGCAAAGUUUUGUGACGUCGGCCACAGGAAAAUAUUCCACAUACCACAUAGCGUUC------UCGUUCACAUGACGACAUGUAU
(((((((.((.(((...(((((((((....)))))).)))))).)).((((....))))......))))))).(((.------((((....)))).)))...... ( -27.60)
>DroSim_CAF1 29594 99 - 1
CUGUGUGCGUUGCCCUCGACUCGCAAAGUUUUGUGACGUCGGCCACAGGAAAAUAUUCCACAUACCACAUAGCGUUC------UCGUUCACAUGACGACAUGUAU
(((((((.((.(((...(((((((((....)))))).)))))).)).((((....))))......))))))).(((.------((((....)))).)))...... ( -27.60)
>DroEre_CAF1 26927 105 - 1
CUGUGUGCGUUGCCCUCGACUCGCAAAGUUUUGUGACGUCGGCCACAGGAAAAUAUUCCACAUACUAUACGGCAUUCCACAUAGCGUUCACAUGACGACAUGUAU
(((((((...((((.(((((((((((....)))))).))))).....((((....))))...........))))...))))))).....(((((....))))).. ( -32.20)
>DroYak_CAF1 27840 100 - 1
CUGUGUGCGUUGCCCUCGACUCGCAAAGUUUUGUGACGUCGGCCACAGGAAAAUAUUCCACAUACCACACAA-----CACAUAGCGUUCACAUGACGACAUGUAU
.((((((.((.(((...(((((((((....)))))).)))))).)).((((....))))......)))))).-----.((((..((((.....))))..)))).. ( -29.40)
>consensus
CUGUGUGCGUUGCCCUCGACUCGCAAAGUUUUGUGACGUCGGCCACAGGAAAAUAUUCCACAUACCACAUAGCGUUC______UCGUUCACAUGACGACAUGUAU
(((((((.((.(((...(((((((((....)))))).)))))).)).((((....))))......))))))).................(((((....))))).. (-27.42 = -26.90 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:33 2006