Locus 8776

Sequence ID 3R_DroMel_CAF1
Location 23,436,337 – 23,436,429
Length 92
Max. P 0.651901
window14100

overview

Window 0

Location 23,436,337 – 23,436,429
Length 92
Sequences 4
Columns 92
Reading direction reverse
Mean pairwise identity 83.92
Mean single sequence MFE -23.40
Consensus MFE -18.74
Energy contribution -18.80
Covariance contribution 0.06
Combinations/Pair 1.12
Mean z-score -1.58
Structure conservation index 0.80
SVM decision value 0.25
SVM RNA-class probability 0.651901
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23436337 92 - 27905053
AAUUCCGAUUCCCGAUCCCAGUCCCAUUCCCAUUCCCUUUCCCCUUUGGAAAACAUGCUGGGGAAAAUUGUGCGCCUCAGUGGCGCUACAGA
..((((((((...))))(((((.......(((..............))).......)))))))))..(((((((((.....))))).)))). ( -24.38)
>DroSec_CAF1 28997 92 - 1
AAUUCCGAUUCCCGAUCCCAGUCCUAUUCCCAUUCCCAUACCCUUUUGGAAAACAUGCUGGGGAAAAUUGUGCUCCUCAGUGGCGCUACAGA
..((((((((...))))(((((.......(((..............))).......)))))))))..((((((.((.....)).)).)))). ( -18.58)
>DroSim_CAF1 27003 75 - 1
AAUUCCGAUUCCCGA-----------------UUCCCAUUCCCUUUUGGAAAACAUGCUGGGGAAAAUUGUGCGCCUCAGUGGCGCUACGGA
...((((.((((((.-----------------......((((.....)))).......)))))).......(((((.....)))))..)))) ( -23.84)
>DroEre_CAF1 25716 81 - 1
AAUUCCGAUUCCCGAUCC-----------CCGAUCCCAUUCCCUGUUGGAAAACAUGCUGGGGAAAAUUGUGCGCCUCAGUGGCGCUACGGA
...((((........(((-----------((((......))..((((....))))....))))).......(((((.....)))))..)))) ( -26.80)
>consensus
AAUUCCGAUUCCCGAUCC___________CCAUUCCCAUUCCCUUUUGGAAAACAUGCUGGGGAAAAUUGUGCGCCUCAGUGGCGCUACAGA
......................................((((((..((.....))....))))))..(((((((((.....))))).)))). (-18.74 = -18.80 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:32 2006