Locus 8774

Sequence ID 3R_DroMel_CAF1
Location 23,435,116 – 23,435,206
Length 90
Max. P 0.963469
window14098

overview

Window 8

Location 23,435,116 – 23,435,206
Length 90
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 86.86
Mean single sequence MFE -26.66
Consensus MFE -24.16
Energy contribution -24.76
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 0.91
SVM decision value 1.55
SVM RNA-class probability 0.963469
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23435116 90 - 27905053
GUGCUCCUGAUUGCCCUU-UGCUCCGGCCGUACUUUUCCCGCCGGAGUCGUAUCUCGAUUAGUGCACAGAAAGAAAAUCUUUGUAUGAUAC----------
((((..(((((((.....-.((((((((.(........).)))))))).......))))))).))))(.((((.....)))).).......---------- ( -27.62)
>DroSec_CAF1 27737 90 - 1
GUGCUCCUGAUUGCCCUC-UGCUCCGGCCGUACUUUUCCCGCCGGAGUCGUAUCUCGAUUAGUGCACAGAAAGAAAAUCUUUGUAUGAUUC----------
((((..(((((((....(-.((((((((.(........).)))))))).).....))))))).))))(.((((.....)))).).......---------- ( -28.30)
>DroSim_CAF1 25771 89 - 1
GUGCUCCUGAUUGCCCUU-UGCUCCGGCCGUACUUUUCCCGCCGGAGUCGUAUCUCGAUUAGUGCACAGAAAGAAAAUCUUUGUAUGAUU-----------
((((..(((((((.....-.((((((((.(........).)))))))).......))))))).))))(.((((.....)))).)......----------- ( -27.62)
>DroEre_CAF1 24644 100 - 1
GUGCUCCUGAUUGCCCUU-UUCUCCGGCCGUACUUUUCCCGCCGGUGUCGUAUCUCGAUUAGUGCACAGAAAGAAAAAUGUUGUACGAUUCUGAAACUUUU
((((..(((((((.....-..(.(((((.(........).))))).)........))))))).)))).(((((......(((....))).......))))) ( -20.88)
>DroYak_CAF1 25450 101 - 1
GUGCUCCUGAUUGCCCUUUUUCUCCGGCCGUACUUUUCCCGCCGGAGUCGUACCACGAUUAGUGCACAGAAAGAAAACGUUACUACGAUUCUUAAACGUUU
((((..(((((((........(((((((.(........).)))))))........))))))).))))...(((((..(((....))).)))))........ ( -28.89)
>consensus
GUGCUCCUGAUUGCCCUU_UGCUCCGGCCGUACUUUUCCCGCCGGAGUCGUAUCUCGAUUAGUGCACAGAAAGAAAAUCUUUGUAUGAUUC__________
((((..(((((((.......((((((((.(........).)))))))).......))))))).)))).................................. (-24.16 = -24.76 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:30 2006