| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,424,997 – 23,425,092 |
| Length | 95 |
| Max. P | 0.626376 |
| Location | 23,424,997 – 23,425,092 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 78.17 |
| Mean single sequence MFE | -25.35 |
| Consensus MFE | -22.34 |
| Energy contribution | -21.98 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.15 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.626376 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23424997 95 - 27905053 UAUGAAAUAUUUUGUAUCU-UA----------------UUUGUACACAGGAAUGCCCUAGUCCCAUCGCUUUGGAGCCUUGCAGUGGCAACCGAGCCGCUGUGCUCUCGCUU ...((.......(((((..-..----------------...))))).(((.....))).......))((...(((((...((((((((......))))))))))))).)).. ( -24.40) >DroSec_CAF1 14562 95 - 1 UCUAAAAUAUUUUGUAUCU-UA----------------UUUUGACACAGGAAUGCCCUAGUCCCAUCGCUUUGGAGCCUUGCAGUGGCAACCGAGCCGCUGUGCUCUCGCUU .........((((((.((.-..----------------....)).))))))................((...(((((...((((((((......))))))))))))).)).. ( -25.30) >DroSim_CAF1 14890 95 - 1 UCUAAAAUAUUUUGUAUCU-UA----------------UUUUGACACAGGAAUGCCCUAGUCCCAUCGCUUUGGAGCCUUGCAGUGGCAAUCGAGCCGCUGUGCUCUCGCUU .........((((((.((.-..----------------....)).))))))................((...(((((...((((((((......))))))))))))).)).. ( -25.30) >DroEre_CAF1 14477 102 - 1 U---------GUUGUAUCUUAAG-AAACUCACUGUAUUAUCUUACGCAGGAAUGUCCUAGUCCCAUCGCUUUGGAGCCUUGCAGUGGCAACCGAGCCGCUGUGCUCUCGCUU .---------(.((...((...(-(...((.(((..(......)..)))))...))..))...)).)((...(((((...((((((((......))))))))))))).)).. ( -25.40) >DroYak_CAF1 14827 111 - 1 UCUUUAAUAUGUUGUAUCU-UAAGAAACUCAUUGUAUUUUCUUACGCAGGAAUGCCCUAGUCCCAUCGCUUUGGAGCCUUGCAGUGGCAACCGAGCCGCUGUGCUCUCGCUU ...................-(((((((..........))))))).(((((.....)))..............(((((...((((((((......))))))))))))).)).. ( -26.00) >DroAna_CAF1 17614 101 - 1 ------ACAUUCUGUACUUUUA-UUUAUUCG--GUA--AUCUCUUGCAGGAAUGUCCCAGUCCCAUUGCUUUGGAGCCUUGUAGCGGCAACCGAGCCGCUGUGCUCUCGCUU ------((((((((((...(((-((.....)--)))--).....)))).))))))............((...(((((....(((((((......))))))).))))).)).. ( -25.70) >consensus UCU_AAAUAUUUUGUAUCU_UA________________UUCUUACACAGGAAUGCCCUAGUCCCAUCGCUUUGGAGCCUUGCAGUGGCAACCGAGCCGCUGUGCUCUCGCUU .............................................(((((.....))).))......((...(((((...((((((((......))))))))))))).)).. (-22.34 = -21.98 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:26 2006